Literature DB >> 26699486

Deep sequencing as a probe of normal stem cell fate and preneoplasia in human epidermis.

Benjamin D Simons1.   

Abstract

Using deep sequencing technology, methods based on the sporadic acquisition of somatic DNA mutations in human tissues have been used to trace the clonal evolution of progenitor cells in diseased states. However, the potential of these approaches to explore cell fate behavior of normal tissues and the initiation of preneoplasia remain underexploited. Focusing on the results of a recent deep sequencing study of eyelid epidermis, we show that the quantitative analysis of mutant clone size provides a general method to resolve the pattern of normal stem cell fate and to detect and characterize the mutational signature of rare field transformations in human tissues, with implications for the early detection of preneoplasia.

Entities:  

Keywords:  DNA sequencing; cancer; epidermis; stem cells

Mesh:

Year:  2015        PMID: 26699486      PMCID: PMC4711853          DOI: 10.1073/pnas.1516123113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

Review 1.  Somatic mutation in cancer and normal cells.

Authors:  Iñigo Martincorena; Peter J Campbell
Journal:  Science       Date:  2015-09-24       Impact factor: 47.728

2.  Accumulation of driver and passenger mutations during tumor progression.

Authors:  Ivana Bozic; Tibor Antal; Hisashi Ohtsuki; Hannah Carter; Dewey Kim; Sining Chen; Rachel Karchin; Kenneth W Kinzler; Bert Vogelstein; Martin A Nowak
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

3.  The ordered architecture of murine ear epidermis is maintained by progenitor cells with random fate.

Authors:  David P Doupé; Allon M Klein; Benjamin D Simons; Philip H Jones
Journal:  Dev Cell       Date:  2010-02-16       Impact factor: 12.270

4.  Continuous labelling studies on mouse skin and intestine.

Authors:  C S Potten; L Kovacs; E Hamilton
Journal:  Cell Tissue Kinet       Date:  1974-05

5.  Relationship between mitosis and the ordered structure of the stratum corneum in mouse epidermis.

Authors:  I C Mackenzie
Journal:  Nature       Date:  1970-05-16       Impact factor: 49.962

6.  Tumour evolution inferred by single-cell sequencing.

Authors:  Nicholas Navin; Jude Kendall; Jennifer Troge; Peter Andrews; Linda Rodgers; Jeanne McIndoo; Kerry Cook; Asya Stepansky; Dan Levy; Diane Esposito; Lakshmi Muthuswamy; Alex Krasnitz; W Richard McCombie; James Hicks; Michael Wigler
Journal:  Nature       Date:  2011-03-13       Impact factor: 49.962

7.  Stochastic fate of p53-mutant epidermal progenitor cells is tilted toward proliferation by UV B during preneoplasia.

Authors:  Allon M Klein; Douglas E Brash; Philip H Jones; Benjamin D Simons
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-15       Impact factor: 11.205

Review 8.  The cancer genome.

Authors:  Michael R Stratton; Peter J Campbell; P Andrew Futreal
Journal:  Nature       Date:  2009-04-09       Impact factor: 49.962

9.  Serial cultivation of strains of human epidermal keratinocytes: the formation of keratinizing colonies from single cells.

Authors:  J G Rheinwald; H Green
Journal:  Cell       Date:  1975-11       Impact factor: 41.582

10.  Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin.

Authors:  Iñigo Martincorena; Amit Roshan; Moritz Gerstung; Peter Ellis; Peter Van Loo; Stuart McLaren; David C Wedge; Anthony Fullam; Ludmil B Alexandrov; Jose M Tubio; Lucy Stebbings; Andrew Menzies; Sara Widaa; Michael R Stratton; Philip H Jones; Peter J Campbell
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

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  20 in total

1.  Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes.

Authors:  Davis J McCarthy; Raghd Rostom; Yuanhua Huang; Daniel J Kunz; Petr Danecek; Marc Jan Bonder; Tzachi Hagai; Ruqian Lyu; Wenyi Wang; Daniel J Gaffney; Benjamin D Simons; Oliver Stegle; Sarah A Teichmann
Journal:  Nat Methods       Date:  2020-03-16       Impact factor: 28.547

Review 2.  A population genetics perspective on the determinants of intra-tumor heterogeneity.

Authors:  Zheng Hu; Ruping Sun; Christina Curtis
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2017-03-06       Impact factor: 10.680

3.  Evolutionary dynamics in pre-invasive neoplasia.

Authors:  Christopher Abbosh; Subramanian Venkatesan; Samuel M Janes; Rebecca C Fitzgerald; Charles Swanton
Journal:  Curr Opin Syst Biol       Date:  2017-04

4.  Constrained positive selection on cancer mutations in normal skin.

Authors:  Iñigo Martincorena; Philip H Jones; Peter J Campbell
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-16       Impact factor: 11.205

5.  Reply to Martincorena et al.: Evidence for constrained positive selection of cancer mutations in normal skin is lacking.

Authors:  Benjamin D Simons
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-16       Impact factor: 11.205

6.  Spatial competition shapes the dynamic mutational landscape of normal esophageal epithelium.

Authors:  Maria P Alcolea; Gabriel Piedrafita; Bartomeu Colom; Michael W J Hall; Agnieszka Wabik; Stefan C Dentro; Joanna C Fowler; Albert Herms; Charlotte King; Swee Hoe Ong; Roshan K Sood; Moritz Gerstung; Inigo Martincorena; Benjamin A Hall; Philip H Jones
Journal:  Nat Genet       Date:  2020-05-18       Impact factor: 38.330

7.  Spatial correlations constrain cellular lifespan and pattern formation in corneal epithelium homeostasis.

Authors:  Lior Strinkovsky; Evgeny Havkin; Ruby Shalom-Feuerstein; Yonatan Savir
Journal:  Elife       Date:  2021-01-12       Impact factor: 8.140

Review 8.  Tracing the Dynamics of Stem Cell Fate.

Authors:  Lemonia Chatzeli; Benjamin D Simons
Journal:  Cold Spring Harb Perspect Biol       Date:  2020-06-01       Impact factor: 9.708

Review 9.  Lineage tracing in human tissues.

Authors:  Calum Gabbutt; Nicholas A Wright; Ann-Marie Baker; Darryl Shibata; Trevor A Graham
Journal:  J Pathol       Date:  2022-05-05       Impact factor: 9.883

10.  Spatial constraints govern competition of mutant clones in human epidermis.

Authors:  M D Lynch; C N S Lynch; E Craythorne; K Liakath-Ali; R Mallipeddi; J N Barker; F M Watt
Journal:  Nat Commun       Date:  2017-10-24       Impact factor: 14.919

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