Literature DB >> 20876136

Accumulation of driver and passenger mutations during tumor progression.

Ivana Bozic1, Tibor Antal, Hisashi Ohtsuki, Hannah Carter, Dewey Kim, Sining Chen, Rachel Karchin, Kenneth W Kinzler, Bert Vogelstein, Martin A Nowak.   

Abstract

Major efforts to sequence cancer genomes are now occurring throughout the world. Though the emerging data from these studies are illuminating, their reconciliation with epidemiologic and clinical observations poses a major challenge. In the current study, we provide a mathematical model that begins to address this challenge. We model tumors as a discrete time branching process that starts with a single driver mutation and proceeds as each new driver mutation leads to a slightly increased rate of clonal expansion. Using the model, we observe tremendous variation in the rate of tumor development-providing an understanding of the heterogeneity in tumor sizes and development times that have been observed by epidemiologists and clinicians. Furthermore, the model provides a simple formula for the number of driver mutations as a function of the total number of mutations in the tumor. Finally, when applied to recent experimental data, the model allows us to calculate the actual selective advantage provided by typical somatic mutations in human tumors in situ. This selective advantage is surprisingly small--0.004 ± 0.0004--and has major implications for experimental cancer research.

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Year:  2010        PMID: 20876136      PMCID: PMC2972991          DOI: 10.1073/pnas.1010978107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

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Journal:  N Engl J Med       Date:  2009-08-05       Impact factor: 91.245

5.  Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations.

Authors:  Hannah Carter; Sining Chen; Leyla Isik; Svitlana Tyekucheva; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Rachel Karchin
Journal:  Cancer Res       Date:  2009-08-04       Impact factor: 12.701

Review 6.  Sequence-based advances in the definition of cancer-associated gene mutations.

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Journal:  Curr Opin Oncol       Date:  2009-01       Impact factor: 3.645

Review 7.  The breast cancer somatic 'muta-ome': tackling the complexity.

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8.  COSMIC (the Catalogue of Somatic Mutations in Cancer): a resource to investigate acquired mutations in human cancer.

Authors:  Simon A Forbes; Gurpreet Tang; Nidhi Bindal; Sally Bamford; Elisabeth Dawson; Charlotte Cole; Chai Yin Kok; Mingming Jia; Rebecca Ewing; Andrew Menzies; Jon W Teague; Michael R Stratton; P Andrew Futreal
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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Authors:  Timothy J Ley; Elaine R Mardis; Li Ding; Bob Fulton; Michael D McLellan; Ken Chen; David Dooling; Brian H Dunford-Shore; Sean McGrath; Matthew Hickenbotham; Lisa Cook; Rachel Abbott; David E Larson; Dan C Koboldt; Craig Pohl; Scott Smith; Amy Hawkins; Scott Abbott; Devin Locke; Ladeana W Hillier; Tracie Miner; Lucinda Fulton; Vincent Magrini; Todd Wylie; Jarret Glasscock; Joshua Conyers; Nathan Sander; Xiaoqi Shi; John R Osborne; Patrick Minx; David Gordon; Asif Chinwalla; Yu Zhao; Rhonda E Ries; Jacqueline E Payton; Peter Westervelt; Michael H Tomasson; Mark Watson; Jack Baty; Jennifer Ivanovich; Sharon Heath; William D Shannon; Rakesh Nagarajan; Matthew J Walter; Daniel C Link; Timothy A Graubert; John F DiPersio; Richard K Wilson
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962

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  334 in total

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Journal:  Pigment Cell Melanoma Res       Date:  2012-02-13       Impact factor: 4.693

3.  Establishment of new mutations in changing environments.

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Journal:  Genetics       Date:  2012-04-27       Impact factor: 4.562

Review 4.  Evaluation of current cancer immunotherapy: hemato-oncology.

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Journal:  Cancer J       Date:  2011 Sep-Oct       Impact factor: 3.360

5.  Population genetics meets cancer genomics.

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6.  Translating cancer 'omics' to improved outcomes.

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7.  Impact of deleterious passenger mutations on cancer progression.

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-06       Impact factor: 11.205

8.  Transcriptional profiling of dividing tumor cells detects intratumor heterogeneity linked to cell proliferation in a brain tumor model.

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Journal:  Mol Oncol       Date:  2015-09-10       Impact factor: 6.603

9.  Mutant TP53 disrupts age-related accumulation patterns of somatic mutations in multiple cancer types.

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Journal:  Cancer Genet       Date:  2016-07-09

10.  Personalized sequencing and the future of medicine: discovery, diagnosis and defeat of disease.

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Journal:  Pharmacogenomics       Date:  2014-11       Impact factor: 2.533

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