| Literature DB >> 26692796 |
Giuseppe E Massimino Cocuzza1, Silvia Di Silvestro2, Rosanna Giordano3, Carmelo Rapisarda1.
Abstract
The discrimination of species in the genus Anuraphis is particularly difficult due to the overlap of morphological characters. In this study, we used the 5' (barcode) and 3' regions of cytochrome oxidase I (COI) to test their utility in the identification of species in this genus as well as closely related species. Both regions were useful to discriminate all the species tested. However the non-barcode 3' region resulted in higher resolution and support for species relationships when the data were analyzed using both Maximum Likelihood and MrBayes. We propose the development of an integrated database that encompasses morphological, molecular, life-cycle, host plant and bibliographic information to facilitate and increase the accuracy of aphid identification.Entities:
Keywords: Insects; aphids; species identification; taxonomy
Year: 2015 PMID: 26692796 PMCID: PMC4668903 DOI: 10.3897/zookeys.529.6081
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Summary of information on samples used in the molecular analysis.
| Voucher code | Species | Host plant | Location | Sampling date | GeneBank accession N° |
|---|---|---|---|---|---|
| S03189 | 25 Jun. 03 | ||||
| S03190 | 25 Jun. 03 | ||||
| S13572 | 18 Sep. 13 | ||||
| S03157 | 6 Jun. 03 | ||||
| S03171 | 9 Jun. 03 | ||||
| S03141 | 15 May 03 | ||||
| S03146 | 17 May 03 | ||||
| S03152 | 28 May 03 | ||||
| S03147 | 17 May 03 | ||||
| S03144 | 17 May 03 | ||||
| S03173 | 9 Jun. 03 | ||||
| S12477 | 25 May 12 | ||||
| S03179 | 15 Jun. 12 | ||||
| S03180 | 15 Jun. 12 | ||||
| S12423 | 2 May 12 | ||||
| S14599 | 13 Jun. 13 | ||||
| S03181 | 22 Jun. 03 | ||||
| S03182 | 22 Jun. 03 | ||||
| S12517 | 3 Jul. 12 | ||||
| S03191 | 25 Jun. 03 | ||||
| S03163 | 6 Jun. 03 | ||||
| S03184 | 22 Jun. 03 | ||||
| S03160 | 6 Jun. 03 | ||||
| S03143 | 16 May 03 | ||||
| S03166 | 9 Jun. 03 | ||||
| S14589 | 21 Apr. 14 | ||||
| S12413 | 16 Apr. 12 | ||||
| S13562 | 12 Jun. 13 | ||||
| S06340 | 20 Apr. 06 | ||||
| S04230 | 20 May 04 | ||||
| S14613 | 31 May 14 | ||||
| S14623 | 1 Jun. 14 | ||||
| S03145 | 15 May 03 |
p-distance and nucleotide divergences (expressed as percentage) of spp. and species used as outgroup.
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5’ | 3’ | 5’ | 3’ | 5’ | 3’ | 5’ | 3’ | 5’ | 3’ | 5’ | 3’ | 5’ | 3’ | 5’ | 3’ | 5’ | 3’ | ||
| 1.7 | 3.2 | ||||||||||||||||||
| 5.7 | 7.2 | 5.8 | 7.4 | ||||||||||||||||
| 5.3 | 6.9 | 5.0 | 6.6 | 3.7 | 4.7 | ||||||||||||||
| 5.5 | 6.9 | 5.2 | 6.6 | 3.9 | 4.8 | 0.2 | 0.8 | ||||||||||||
| 6.6 | 7.0 | 6.7 | 6.6 | 4.3 | 5.9 | 5.6 | 3.3 | 5.6 | 3.8 | ||||||||||
| 6.8 | 8.3 | 6.9 | 7.9 | 5.6 | 7.6 | 6.6 | 6.9 | 6.6 | 7.0 | 6.7 | 7.1 | ||||||||
| 7.3 | 7.9 | 6.7 | 8.2 | 6.2 | 8.0 | 6.7 | 7.6 | 6.7 | 7.7 | 6.8 | 8.1 | 5.5 | 7.4 | ||||||
| 8.5 | 8.4 | 8.9 | 8.5 | 7.1 | 8.5 | 7.8 | 7.5 | 7.8 | 7.6 | 7.8 | 8.2 | 7.5 | 8.0 | 6.9 | 6.8 | ||||
| 10.0 | 9.9 | 9.1 | 8.1 | 9.1 | 9.1 | 9.0 | 7.9 | 9.0 | 8.0 | 8.9 | 8.4 | 8.1 | 8.1 | 8.5 | 10.0 | 10.0 | 9.5 | ||
Figure 2c.MrBayes tree estimated using 648 bp at the 3’ end of COI for selected species.
Figure 2a.Likelihood tree estimated using 648 bp at the 3’ end of COI for selected species.
Figure 1a.Neighbor-Joining tree showing relationships among selected species estimated using 648 bp at the 3’ end of the COI mitochondrial gene. Distance were estimated using the p-distance model of sequence evolution.
Figure 3.Dendrogram of cluster-species results based on Mahalanobis’ generalized distances in apterae for spp. (20 individual for each species) based on 16 morphometric characters (from Barbagallo and Cocuzza 2003).