Literature DB >> 26688837

SchizConnect: Virtual Data Integration in Neuroimaging.

Jose Luis Ambite1, Marcelo Tallis2, Kathryn Alpert3, David B Keator4, Margaret King5, Drew Landis6, George Konstantinidis, Vince D Calhoun, Steven G Potkin, Jessica A Turner, Lei Wang.   

Abstract

In many scientific domains, including neuroimaging studies, there is a need to obtain increasingly larger cohorts to achieve the desired statistical power for discovery. However, the economics of imaging studies make it unlikely that any single study or consortia can achieve the desired sample sizes. What is needed is an architecture that can easily incorporate additional studies as they become available. We present such architecture based on a virtual data integration approach, where data remains at the original sources, and is retrieved and harmonized in response to user queries. This is in contrast to approaches that move the data to a central warehouse. We implemented our approach in the SchizConnect system that integrates data from three neuroimaging consortia on Schizophrenia: FBIRN's Human Imaging Database (HID), MRN's Collaborative Imaging and Neuroinformatics System (COINS), and the NUSDAST project at XNAT Central. A portal providing harmonized access to these sources is publicly deployed at schizconnect.org.

Entities:  

Keywords:  Data integration; Mediation; Neuroimaging; Schema Mappings

Year:  2015        PMID: 26688837      PMCID: PMC4682903          DOI: 10.1007/978-3-319-21843-4_4

Source DB:  PubMed          Journal:  Data Integr Life Sci


  11 in total

Review 1.  Sharing heterogeneous data: the national database for autism research.

Authors:  Dan Hall; Michael F Huerta; Matthew J McAuliffe; Gregory K Farber
Journal:  Neuroinformatics       Date:  2012-10

Review 2.  Function biomedical informatics research network recommendations for prospective multicenter functional MRI studies.

Authors:  Gary H Glover; Bryon A Mueller; Jessica A Turner; Theo G M van Erp; Thomas T Liu; Douglas N Greve; James T Voyvodic; Jerod Rasmussen; Gregory G Brown; David B Keator; Vince D Calhoun; Hyo Jong Lee; Judith M Ford; Daniel H Mathalon; Michele Diaz; Daniel S O'Leary; Syam Gadde; Adrian Preda; Kelvin O Lim; Cynthia G Wible; Hal S Stern; Aysenil Belger; Gregory McCarthy; Burak Ozyurt; Steven G Potkin
Journal:  J Magn Reson Imaging       Date:  2012-02-07       Impact factor: 4.813

3.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

4.  A national human neuroimaging collaboratory enabled by the Biomedical Informatics Research Network (BIRN).

Authors:  David B Keator; J S Grethe; D Marcus; B Ozyurt; S Gadde; Sean Murphy; S Pieper; D Greve; R Notestine; H J Bockholt; P Papadopoulos
Journal:  IEEE Trans Inf Technol Biomed       Date:  2008-03

5.  Terminology development towards harmonizing multiple clinical neuroimaging research repositories.

Authors:  Jessica A Turner; Danielle Pasquerello; Matthew D Turner; David B Keator; Kathryn Alpert; Margaret King; Drew Landis; Vince D Calhoun; Steven G Potkin; Marcelo Tallis; Jose Luis Ambite; Lei Wang
Journal:  Data Integr Life Sci       Date:  2015-07-08

Review 6.  The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data.

Authors:  Paul M Thompson; Jason L Stein; Sarah E Medland; Derrek P Hibar; Alejandro Arias Vasquez; Miguel E Renteria; Roberto Toro; Neda Jahanshad; Gunter Schumann; Barbara Franke; Margaret J Wright; Nicholas G Martin; Ingrid Agartz; Martin Alda; Saud Alhusaini; Laura Almasy; Jorge Almeida; Kathryn Alpert; Nancy C Andreasen; Ole A Andreassen; Liana G Apostolova; Katja Appel; Nicola J Armstrong; Benjamin Aribisala; Mark E Bastin; Michael Bauer; Carrie E Bearden; Orjan Bergmann; Elisabeth B Binder; John Blangero; Henry J Bockholt; Erlend Bøen; Catherine Bois; Dorret I Boomsma; Tom Booth; Ian J Bowman; Janita Bralten; Rachel M Brouwer; Han G Brunner; David G Brohawn; Randy L Buckner; Jan Buitelaar; Kazima Bulayeva; Juan R Bustillo; Vince D Calhoun; Dara M Cannon; Rita M Cantor; Melanie A Carless; Xavier Caseras; Gianpiero L Cavalleri; M Mallar Chakravarty; Kiki D Chang; Christopher R K Ching; Andrea Christoforou; Sven Cichon; Vincent P Clark; Patricia Conrod; Giovanni Coppola; Benedicto Crespo-Facorro; Joanne E Curran; Michael Czisch; Ian J Deary; Eco J C de Geus; Anouk den Braber; Giuseppe Delvecchio; Chantal Depondt; Lieuwe de Haan; Greig I de Zubicaray; Danai Dima; Rali Dimitrova; Srdjan Djurovic; Hongwei Dong; Gary Donohoe; Ravindranath Duggirala; Thomas D Dyer; Stefan Ehrlich; Carl Johan Ekman; Torbjørn Elvsåshagen; Louise Emsell; Susanne Erk; Thomas Espeseth; Jesen Fagerness; Scott Fears; Iryna Fedko; Guillén Fernández; Simon E Fisher; Tatiana Foroud; Peter T Fox; Clyde Francks; Sophia Frangou; Eva Maria Frey; Thomas Frodl; Vincent Frouin; Hugh Garavan; Sudheer Giddaluru; David C Glahn; Beata Godlewska; Rita Z Goldstein; Randy L Gollub; Hans J Grabe; Oliver Grimm; Oliver Gruber; Tulio Guadalupe; Raquel E Gur; Ruben C Gur; Harald H H Göring; Saskia Hagenaars; Tomas Hajek; Geoffrey B Hall; Jeremy Hall; John Hardy; Catharina A Hartman; Johanna Hass; Sean N Hatton; Unn K Haukvik; Katrin Hegenscheid; Andreas Heinz; Ian B Hickie; Beng-Choon Ho; David Hoehn; Pieter J Hoekstra; Marisa Hollinshead; Avram J Holmes; Georg Homuth; Martine Hoogman; L Elliot Hong; Norbert Hosten; Jouke-Jan Hottenga; Hilleke E Hulshoff Pol; Kristy S Hwang; Clifford R Jack; Mark Jenkinson; Caroline Johnston; Erik G Jönsson; René S Kahn; Dalia Kasperaviciute; Sinead Kelly; Sungeun Kim; Peter Kochunov; Laura Koenders; Bernd Krämer; John B J Kwok; Jim Lagopoulos; Gonzalo Laje; Mikael Landen; Bennett A Landman; John Lauriello; Stephen M Lawrie; Phil H Lee; Stephanie Le Hellard; Herve Lemaître; Cassandra D Leonardo; Chiang-Shan Li; Benny Liberg; David C Liewald; Xinmin Liu; Lorna M Lopez; Eva Loth; Anbarasu Lourdusamy; Michelle Luciano; Fabio Macciardi; Marise W J Machielsen; Glenda M Macqueen; Ulrik F Malt; René Mandl; Dara S Manoach; Jean-Luc Martinot; Mar Matarin; Karen A Mather; Manuel Mattheisen; Morten Mattingsdal; Andreas Meyer-Lindenberg; Colm McDonald; Andrew M McIntosh; Francis J McMahon; Katie L McMahon; Eva Meisenzahl; Ingrid Melle; Yuri Milaneschi; Sebastian Mohnke; Grant W Montgomery; Derek W Morris; Eric K Moses; Bryon A Mueller; Susana Muñoz Maniega; Thomas W Mühleisen; Bertram Müller-Myhsok; Benson Mwangi; Matthias Nauck; Kwangsik Nho; Thomas E Nichols; Lars-Göran Nilsson; Allison C Nugent; Lars Nyberg; Rene L Olvera; Jaap Oosterlaan; Roel A Ophoff; Massimo Pandolfo; Melina Papalampropoulou-Tsiridou; Martina Papmeyer; Tomas Paus; Zdenka Pausova; Godfrey D Pearlson; Brenda W Penninx; Charles P Peterson; Andrea Pfennig; Mary Phillips; G Bruce Pike; Jean-Baptiste Poline; Steven G Potkin; Benno Pütz; Adaikalavan Ramasamy; Jerod Rasmussen; Marcella Rietschel; Mark Rijpkema; Shannon L Risacher; Joshua L Roffman; Roberto Roiz-Santiañez; Nina Romanczuk-Seiferth; Emma J Rose; Natalie A Royle; Dan Rujescu; Mina Ryten; Perminder S Sachdev; Alireza Salami; Theodore D Satterthwaite; Jonathan Savitz; Andrew J Saykin; Cathy Scanlon; Lianne Schmaal; Hugo G Schnack; Andrew J Schork; S Charles Schulz; Remmelt Schür; Larry Seidman; Li Shen; Jody M Shoemaker; Andrew Simmons; Sanjay M Sisodiya; Colin Smith; Jordan W Smoller; Jair C Soares; Scott R Sponheim; Emma Sprooten; John M Starr; Vidar M Steen; Stephen Strakowski; Lachlan Strike; Jessika Sussmann; Philipp G Sämann; Alexander Teumer; Arthur W Toga; Diana Tordesillas-Gutierrez; Daniah Trabzuni; Sarah Trost; Jessica Turner; Martijn Van den Heuvel; Nic J van der Wee; Kristel van Eijk; Theo G M van Erp; Neeltje E M van Haren; Dennis van 't Ent; Marie-Jose van Tol; Maria C Valdés Hernández; Dick J Veltman; Amelia Versace; Henry Völzke; Robert Walker; Henrik Walter; Lei Wang; Joanna M Wardlaw; Michael E Weale; Michael W Weiner; Wei Wen; Lars T Westlye; Heather C Whalley; Christopher D Whelan; Tonya White; Anderson M Winkler; Katharina Wittfeld; Girma Woldehawariat; Christiane Wolf; David Zilles; Marcel P Zwiers; Anbupalam Thalamuthu; Peter R Schofield; Nelson B Freimer; Natalia S Lawrence; Wayne Drevets
Journal:  Brain Imaging Behav       Date:  2014-06       Impact factor: 3.978

7.  Neuroscience Data Integration through Mediation: An (F)BIRN Case Study.

Authors:  Naveen Ashish; José Luis Ambite; Maria Muslea; Jessica A Turner
Journal:  Front Neuroinform       Date:  2010-12-28       Impact factor: 4.081

8.  COINS: An Innovative Informatics and Neuroimaging Tool Suite Built for Large Heterogeneous Datasets.

Authors:  Adam Scott; Will Courtney; Dylan Wood; Raul de la Garza; Susan Lane; Margaret King; Runtang Wang; Jody Roberts; Jessica A Turner; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2011-12-23       Impact factor: 4.081

9.  Northwestern University Schizophrenia Data and Software Tool (NUSDAST).

Authors:  Lei Wang; Alex Kogan; Derin Cobia; Kathryn Alpert; Anthony Kolasny; Michael I Miller; Daniel Marcus
Journal:  Front Neuroinform       Date:  2013-11-07       Impact factor: 4.081

10.  Automated collection of imaging and phenotypic data to centralized and distributed data repositories.

Authors:  Margaret D King; Dylan Wood; Brittny Miller; Ross Kelly; Drew Landis; William Courtney; Runtang Wang; Jessica A Turner; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2014-06-05       Impact factor: 4.081

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  6 in total

1.  Future Directions for Examination of Brain Networks in Neurodevelopmental Disorders.

Authors:  Lucina Q Uddin; Katherine H Karlsgodt
Journal:  J Clin Child Adolesc Psychol       Date:  2018-04-10

2.  Bridging the Brain and Data Sciences.

Authors:  John Darrell Van Horn
Journal:  Big Data       Date:  2020-11-18       Impact factor: 4.426

3.  Subtyping schizophrenia based on symptomatology and cognition using a data driven approach.

Authors:  Luis Fs Castro-de-Araujo; Daiane B Machado; Maurício L Barreto; Richard Aa Kanaan
Journal:  Psychiatry Res Neuroimaging       Date:  2020-07-15       Impact factor: 2.493

4.  Advances in Studying Brain Morphology: The Benefits of Open-Access Data.

Authors:  Christopher R Madan
Journal:  Front Hum Neurosci       Date:  2017-08-04       Impact factor: 3.169

Review 5.  Translational bioinformatics in mental health: open access data sources and computational biomarker discovery.

Authors:  Jessica D Tenenbaum; Krithika Bhuvaneshwar; Jane P Gagliardi; Kate Fultz Hollis; Peilin Jia; Liang Ma; Radhakrishnan Nagarajan; Gopalkumar Rakesh; Vignesh Subbian; Shyam Visweswaran; Zhongming Zhao; Leon Rozenblit
Journal:  Brief Bioinform       Date:  2019-05-21       Impact factor: 11.622

6.  Altered white matter connectivity in patients with schizophrenia: An investigation using public neuroimaging data from SchizConnect.

Authors:  Sung Woo Joo; Woon Yoon; Seung-Hyun Shon; Harin Kim; Saetbyeol Cha; Kee Jeong Park; Jungsun Lee
Journal:  PLoS One       Date:  2018-10-09       Impact factor: 3.240

  6 in total

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