| Literature DB >> 26684017 |
Sangya Agarwal1, Garima Sharma, Shweta Dang, Sanjay Gupta, Reema Gabrani.
Abstract
Staphylococcus epidermidis has emerged as the main causative agent for graft-related and nosocomial infections. Rampant use of antibiotics and biofilm formed by the organism results in poor penetration of the drug and further aggravates the antibiotic resistance, emphasizing an urgent need to explore alternative treatment modalities. Antimicrobial peptides (AMPs), produced as effector molecules of the innate immunity of living organisms, have therapeutic potential that can be used to inhibit the growth of microbes. In addition, the susceptibility of a microbe to become resistant to an AMP is relatively low. The AMPs are amphipathic peptides of 12-100 residues, which have broad-spectrum activity against microbes. There are scattered reports of AMPs listed against S. epidermidis and there is an urgent need to systematically study the AMPs. Various natural AMPs as well as synthetic peptides have been investigated against S. epidermidis. These peptides have been shown to inhibit both planktonic culture and S. epidermidis biofilm effectively. The multiple modes of action in killing the organism minimize the chances for the development of resistance. This review focused on various natural and synthetic peptides that demonstrate activity against S. epidermidis.Entities:
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Year: 2015 PMID: 26684017 PMCID: PMC5588407 DOI: 10.1159/000443479
Source DB: PubMed Journal: Med Princ Pract ISSN: 1011-7571 Impact factor: 1.927
Classification of AMPs into four clusters based on their structure
| Sample No. | Type of AMP | Structure | Property | Example | Basic structure | Reference |
|---|---|---|---|---|---|---|
| 1 | Type I: linear α-helical peptides | Highly positively charged Unstructured in aqueous solution, and fold into their α-helical configuration when they bind to the bacterial membrane | 27% of peptides belong to this group Cationic amphipathic helices Capping at the N- and C-terminus stabilizes the helix Kill the microbes by creating channels in the membranes | Alamethicin, cecropin, magainin, LL-37 | $$ | 22 |
| 2 | Type II:cyclic peptides with β-sheet structure | 1–5 disulfide bonds Stably assembled by either disulfide bonds or cyclization of the peptide backbone | Number of disulfide bonds decide degree of cyclic conformation Exist in β-sheet conformation in aqueous solution Act on intracellular targets Enter cell by lipid flip-flop movement | Tachyplesins, defensins, protegrins, polymyxin | $$ | 23 |
| 3 | Type III: extended peptide | Linear in shape No secondary structure | Over representation of 1 type of amino acid Rich in proline and/or glycine, tryptophan or histidine Aggregate in the membranes and create a voltage-induced channel, the peptides are translocated into cytoplasm | Histatin histidine),ritrpticin (arginine), diptericins(glycine),indolicidin | $$ | 24 |
| 4 | Type IV:looped peptide | Looped structure due to the single disulfide, amide or isopeptide bond Antiparallel β-sheet orientation | Short in size, easy to synthesize and proteolytically stable | Lantibiotics | $$ | 23 |
Different characteristics of natural and synthetic AMPs listed from various sources against S. epidermidis
| Sample No. | Type of AMP | Source | Sequence | Characteristics | Mechanism of action | Reference |
|---|---|---|---|---|---|---|
| 1 | Hepcidin | Liver of vertebrates | RRRRRDTHFPICIFCCGCCHRSKCGMCCKT | Human hepcidin: 30% cysteine content, 2–3 kDa, net charge of +3 at neutral pH, consists of intra-molecular disulfide bonds | Interferes with intracellular nucleic acids | 29, 30 |
| 2 | Temporin A | European red frog | FLPLIGRVLSGIL | Net positive charge, highly hydrophobic, AMP amide | Form ion-conducting and anion-selective channels | 31 |
| 3 | Temporin B (TB-KK) | Granular glands of European red frog | YLLPIVGNLLKSLL KKYLLPIVGNLLKSLL | α-Helix structure, nontoxic to mammalian cells | Does not aggregate into the membrane Causes the collapse of plasma membrane potential | 32, 33 |
| 4 | Royal Jellein I (RJ I-C, RJ II-C, RJ III-C) | Mandible and hypopharyngeal glands of honeybees | PFKIDIHLGGY TPFKISIHLGGY EPFKISIHLGGY | β-Sheet, amidated at C-terminus, net charge of +2 | Folds and aggregates into the membrane | 32 |
| 5 | MIX | Temporin B + Royal Jellein I-C | KKYLLPIVGNLLKSLL PFKIDIHLGGY | Synergistic combination | Modulates proinflammatory cytokines | 32 |
| 6 | Temporin-1DRa and its analogs | California red-legged frog | HFLGTLVNLAKKIL HFLKKLVKLAKKIL HFLGKLKNLAKKIL | α-Helix, high lysine content: net charge +3 at pH 7 | Nonspecific perturbation of the membrane | 34, 35 |
| 7 | Ranalexin | Skin of the American bullfrog | NHFLGGLIKIVPAMICAVTKKCCO | Polycationic peptide | Shows multiple killing mechanisms and affects the cell wall or the cell membrane | 36–38 |
| 8 | Buforin II | Derived from buforin I | TRSSRAGLQFPVGRVHR-LLRK | Polycationic peptide | Causes the disruption of intracellular processes | 36, 39, 40 |
| 9 | Epidermicin NI01 | MAAFMKLIQFLATKGQKYVSLAWKHKGTILKWINAGQSFEWIYKQIKKLWA | Highly cationic, plasmid-encoded peptide, globular α-helical structure | Acts by toroidal pore formation | 41 | |
| 10 | Bactericidal peptide 2 (BP2) | SAMPs | GKWKLFKKAFKKFLKIL-AC | Lipopolysaccharide binding domain, amphipathic conformation | Mediates killing by membrane disruption or pore formation | 42 |
| 11 | Compound 5 | Derivative of thiazolidinone | NA | β-peptoid-peptide hybrid | YycG histidine kinase inhibitor | 43 |
| 12 | Compound 2 | Derivative of thiazolidinone | [2-(4-[3-(2-ethylphenyl)-2-[(2-ethylphenyl)imino]-4-oxothiazolidin-5-ylidene] methyl)-2-methoxyphenoxy] acetic acid | Thiazolidinone core structure | YycG histidine kinase inhibitor | 43 |
| 13 | Derivatives of compound 2 | Synthetic compounds from compound 2 | NA | Thiazolidinone core structure | YycG histidine kinase inhibitor | 43 |
| 14 | β-Peptoid–peptide | Peptidomimetic | NA | Structural analogs of peptides, amide bond isosteres result in high stability | Pore formation and disruption of integrity of bacterial membrane | |
| NA = Not available. | ||||||