Literature DB >> 26680017

Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE, NAC and YUCCA genes in the heteroblastic development of the temperate rainforest tree Gevuina avellana (Proteaceae).

Enrique Ostria-Gallardo1, Aashish Ranjan2,3, Daniel H Chitwood4, Ravi Kumar5, Brad T Townsley2, Yasunori Ichihashi6, Luis J Corcuera1, Neelima R Sinha2.   

Abstract

Heteroblasty, the temporal development of the meristem, can produce diverse leaf shapes within a plant. Gevuina avellana, a tree from the South American temperate rainforest shows strong heteroblasty affecting leaf shape, transitioning from juvenile simple leaves to highly pinnate adult leaves. Light availability within the forest canopy also modulates its leaf size and complexity. Here we studied how the interaction between the light environment and the heteroblastic progression of leaves is coordinated in this species. We used RNA-seq on the Illumina platform to compare the range of transcriptional responses in leaf primordia of G. avellana at different heteroblastic stages and growing under different light environments. We found a steady up-regulation of SQUAMOSA PROMOTER BINDING PROTEIN LIKE (SPL), NAC, YUCCA and AGAMOUS-LIKE genes associated with increases in age, leaf complexity, and light availability. In contrast, expression of TCP, TPR and KNOTTED1 homeobox genes showed a sustained down-regulation. Additionally, genes involved in auxin synthesis/transport and jasmonate activity were differentially expressed, indicating an active regulation of processes controlled by these hormones. Our large-scale transcriptional analysis of the leaf primordia of G. avellana sheds light on the integration of internal and external cues during heteroblastic development in this species.
© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Entities:  

Keywords:  Gevuina avellana; RNA-seq; heteroblasty; light availability; temperate rainforest; transcriptional regulation

Mesh:

Substances:

Year:  2015        PMID: 26680017     DOI: 10.1111/nph.13776

Source DB:  PubMed          Journal:  New Phytol        ISSN: 0028-646X            Impact factor:   10.151


  13 in total

1.  Climate and Developmental Plasticity: Interannual Variability in Grapevine Leaf Morphology.

Authors:  Daniel H Chitwood; Susan M Rundell; Darren Y Li; Quaneisha L Woodford; Tommy T Yu; Jose R Lopez; Daniel Greenblatt; Julie Kang; Jason P Londo
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2.  Plasticity of phenotype and heteroblasty in contrasting populations of Acacia koa.

Authors:  Kyle M E Rose; Michael V Mickelbart; Douglass F Jacobs
Journal:  Ann Bot       Date:  2019-10-18       Impact factor: 4.357

3.  Mapping morphological shape as a high-dimensional functional curve.

Authors:  Guifang Fu; Mian Huang; Wenhao Bo; Han Hao; Rongling Wu
Journal:  Brief Bioinform       Date:  2018-05-01       Impact factor: 11.622

4.  To be serrate or pinnate: diverse leaf forms of yarrows (Achillea) are linked to differential expression patterns of NAM genes.

Authors:  Sha Sha; Duo Chen; Ming Liu; Ke-Lai Li; Chen-Kun Jiang; Dong-Hui Wang; Yan-Ping Guo
Journal:  Ann Bot       Date:  2018-02-12       Impact factor: 4.357

5.  Leaf heteroblasty in Passiflora edulis as revealed by metabolic profiling and expression analyses of the microRNAs miR156 and miR172.

Authors:  Priscila O Silva; Diego S Batista; João Henrique F Cavalcanti; Andréa D Koehler; Lorena M Vieira; Amanda M Fernandes; Carlos Hernan Barrera-Rojas; Dimas M Ribeiro; Fabio T S Nogueira; Wagner C Otoni
Journal:  Ann Bot       Date:  2019-07-08       Impact factor: 4.357

6.  A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms.

Authors:  Christiane Noronha Fernandes-Brum; Pâmela Marinho Rezende; Thales Henrique Cherubino Ribeiro; Raphael Ricon de Oliveira; Thaís Cunha de Sousa Cardoso; Laurence Rodrigues do Amaral; Matheus de Souza Gomes; Antonio Chalfun-Junior
Journal:  PLoS One       Date:  2017-04-27       Impact factor: 3.240

7.  Unraveling the Developmental and Genetic Mechanisms Underpinning Floral Architecture in Proteaceae.

Authors:  Catherine Damerval; Hélène Citerne; Natalia Conde E Silva; Yves Deveaux; Etienne Delannoy; Johann Joets; Franck Simonnet; Yannick Staedler; Jürg Schönenberger; Jennifer Yansouni; Martine Le Guilloux; Hervé Sauquet; Sophie Nadot
Journal:  Front Plant Sci       Date:  2019-01-25       Impact factor: 5.753

8.  A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated to their microhabitat preference.

Authors:  Enrique Ostria-Gallardo; Giovanni Larama; Graciela Berríos; Ana Fallard; Ana Gutiérrez-Moraga; Ingo Ensminger; León A Bravo
Journal:  BMC Plant Biol       Date:  2020-02-04       Impact factor: 4.215

Review 9.  The Roles of Auxin Biosynthesis YUCCA Gene Family in Plants.

Authors:  Xu Cao; Honglei Yang; Chunqiong Shang; Sang Ma; Li Liu; Jialing Cheng
Journal:  Int J Mol Sci       Date:  2019-12-16       Impact factor: 5.923

10.  Chromosome-Scale Assembly and Annotation of the Macadamia Genome (Macadamia integrifolia HAES 741).

Authors:  Catherine J Nock; Abdul Baten; Ramil Mauleon; Kirsty S Langdon; Bruce Topp; Craig Hardner; Agnelo Furtado; Robert J Henry; Graham J King
Journal:  G3 (Bethesda)       Date:  2020-10-05       Impact factor: 3.154

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