Literature DB >> 26670560

A Federated Network for Translational Cancer Research Using Clinical Data and Biospecimens.

Rebecca S Jacobson1, Michael J Becich2, Roni J Bollag3, Girish Chavan2, Julia Corrigan2, Rajiv Dhir2, Michael D Feldman4, Carmelo Gaudioso5, Elizabeth Legowski2, Nita J Maihle3, Kevin Mitchell2, Monica Murphy5, Mayurapriyan Sakthivel5, Eugene Tseytlin2, JoEllen Weaver4.   

Abstract

Advances in cancer research and personalized medicine will require significant new bridging infrastructures, including more robust biorepositories that link human tissue to clinical phenotypes and outcomes. In order to meet that challenge, four cancer centers formed the Text Information Extraction System (TIES) Cancer Research Network, a federated network that facilitates data and biospecimen sharing among member institutions. Member sites can access pathology data that are de-identified and processed with the TIES natural language processing system, which creates a repository of rich phenotype data linked to clinical biospecimens. TIES incorporates multiple security and privacy best practices that, combined with legal agreements, network policies, and procedures, enable regulatory compliance. The TIES Cancer Research Network now provides integrated access to investigators at all member institutions, where multiple investigator-driven pilot projects are underway. Examples of federated search across the network illustrate the potential impact on translational research, particularly for studies involving rare cancers, rare phenotypes, and specific biologic behaviors. The network satisfies several key desiderata including local control of data and credentialing, inclusion of rich phenotype information, and applicability to diverse research objectives. The TIES Cancer Research Network presents a model for a national data and biospecimen network. ©2015 American Association for Cancer Research.

Entities:  

Mesh:

Year:  2015        PMID: 26670560      PMCID: PMC4683415          DOI: 10.1158/0008-5472.CAN-15-1973

Source DB:  PubMed          Journal:  Cancer Res        ISSN: 0008-5472            Impact factor:   12.701


  23 in total

1.  The path to personalized medicine.

Authors:  Margaret A Hamburg; Francis S Collins
Journal:  N Engl J Med       Date:  2010-06-15       Impact factor: 91.245

2.  A self-scaling, distributed information architecture for public health, research, and clinical care.

Authors:  Andrew J McMurry; Clint A Gilbert; Ben Y Reis; Henry C Chueh; Isaac S Kohane; Kenneth D Mandl
Journal:  J Am Med Inform Assoc       Date:  2007-04-25       Impact factor: 4.497

3.  The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Authors:  Griffin M Weber; Shawn N Murphy; Andrew J McMurry; Douglas Macfadden; Daniel J Nigrin; Susanne Churchill; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

4.  A review of international biobanks and networks: success factors and key benchmarks.

Authors:  Jim Vaught; Andrea Kelly; Robert Hewitt
Journal:  Biopreserv Biobank       Date:  2010-03-17       Impact factor: 2.300

5.  Federalist principles for healthcare data networks.

Authors:  Kenneth D Mandl; Isaac S Kohane
Journal:  Nat Biotechnol       Date:  2015-04       Impact factor: 54.908

6.  Nanoscale nuclear architecture for cancer diagnosis beyond pathology via spatial-domain low-coherence quantitative phase microscopy.

Authors:  Pin Wang; Rajan K Bista; Walid E Khalbuss; Wei Qiu; Shikhar Uttam; Kevin Staton; Lin Zhang; Teresa A Brentnall; Randall E Brand; Yang Liu
Journal:  J Biomed Opt       Date:  2010 Nov-Dec       Impact factor: 3.170

7.  Ways toward an early diagnosis in Alzheimer's disease: the Alzheimer's Disease Neuroimaging Initiative (ADNI).

Authors:  Susanne G Mueller; Michael W Weiner; Leon J Thal; Ronald C Petersen; Clifford R Jack; William Jagust; John Q Trojanowski; Arthur W Toga; Laurel Beckett
Journal:  Alzheimers Dement       Date:  2005-07       Impact factor: 21.566

8.  The sharing partnership for innovative research in translation (SPIRiT) consortium: a model for collaboration across CTSA sites.

Authors:  Steven E Reis; P Daniel Patterson; Garret A Fitzgerald; Daniel Ford; Robert S Sherwin; Julian Solway; Bradley A Evanoff
Journal:  Clin Transl Sci       Date:  2013-04       Impact factor: 4.689

9.  pSCANNER: patient-centered Scalable National Network for Effectiveness Research.

Authors:  Lucila Ohno-Machado; Zia Agha; Douglas S Bell; Lisa Dahm; Michele E Day; Jason N Doctor; Davera Gabriel; Maninder K Kahlon; Katherine K Kim; Michael Hogarth; Michael E Matheny; Daniella Meeker; Jonathan R Nebeker
Journal:  J Am Med Inform Assoc       Date:  2014-04-29       Impact factor: 4.497

10.  National Mesothelioma Virtual Bank: a standard based biospecimen and clinical data resource to enhance translational research.

Authors:  Waqas Amin; Anil V Parwani; Linda Schmandt; Sambit K Mohanty; Ghada Farhat; Andrew K Pople; Sharon B Winters; Nancy B Whelan; Althea M Schneider; John T Milnes; Federico A Valdivieso; Michael Feldman; Harvey I Pass; Rajiv Dhir; Jonathan Melamed; Michael J Becich
Journal:  BMC Cancer       Date:  2008-08-13       Impact factor: 4.430

View more
  15 in total

1.  Methods to Improve Sustainability of a Large Academic Biorepository.

Authors:  Susan M Kelly; Luke T Wiehagen; Philip E Schumacher; Rajiv Dhir
Journal:  Biopreserv Biobank       Date:  2016-11-18       Impact factor: 2.300

2.  Workshop summary: Potential usefulness and feasibility of a US National Mesothelioma Registry.

Authors:  Kristin J Cummings; Michael J Becich; David J Blackley; Dennis Deapen; Robert Harrison; Raffit Hassan; S Jane Henley; Mary Hesdorffer; D Kevin Horton; Jacek M Mazurek; Harvey I Pass; Emanuela Taioli; Xiao-Cheng Wu; Marjorie G Zauderer; David N Weissman
Journal:  Am J Ind Med       Date:  2019-11-19       Impact factor: 2.214

3.  Molecular Biological Features of Nottingham Histological Grade 3 Breast Cancers.

Authors:  Hideo Takahashi; Masanori Oshi; Mariko Asaoka; Li Yan; Itaru Endo; Kazuaki Takabe
Journal:  Ann Surg Oncol       Date:  2020-05-20       Impact factor: 5.344

4.  Lymphovascular invasion in breast cancer is associated with gene expression signatures of cell proliferation but not lymphangiogenesis or immune response.

Authors:  Mariko Asaoka; Santosh K Patnaik; Frank Zhang; Takashi Ishikawa; Kazuaki Takabe
Journal:  Breast Cancer Res Treat       Date:  2020-04-13       Impact factor: 4.872

5.  How Will Big Data Improve Clinical and Basic Research in Radiation Therapy?

Authors:  Barry S Rosenstein; Jacek Capala; Jason A Efstathiou; Jeff Hammerbacher; Sarah L Kerns; Feng-Ming Spring Kong; Harry Ostrer; Fred W Prior; Bhadrasain Vikram; John Wong; Ying Xiao
Journal:  Int J Radiat Oncol Biol Phys       Date:  2015-11-11       Impact factor: 7.038

6.  An information model for computable cancer phenotypes.

Authors:  Harry Hochheiser; Melissa Castine; David Harris; Guergana Savova; Rebecca S Jacobson
Journal:  BMC Med Inform Decis Mak       Date:  2016-09-15       Impact factor: 2.796

7.  Application of Text Information Extraction System for Real-Time Cancer Case Identification in an Integrated Healthcare Organization.

Authors:  Fagen Xie; Janet Lee; Corrine E Munoz-Plaza; Erin E Hahn; Wansu Chen
Journal:  J Pathol Inform       Date:  2017-12-14

8.  Integration of Cancer Registry Data into the Text Information Extraction System: Leveraging the Structured Data Import Tool.

Authors:  Faina Linkov; Jonathan C Silverstein; Michael Davis; Brenda Crocker; Degan Hao; Althea Schneider; Melissa Schwenk; Sharon Winters; Joyce Zelnis; Adrian V Lee; Michael J Becich
Journal:  J Pathol Inform       Date:  2018-12-24

9.  Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD).

Authors:  Dinesh Pal Mudaranthakam; Elena Shergina; Michele Park; Jeffrey Thompson; David Streeter; Jinxiang Hu; Jo Wick; Byron Gajewski; Devin C Koestler; Andrew K Godwin; Roy A Jensen; Matthew S Mayo
Journal:  Cancer Inform       Date:  2019-11-18

10.  APOBEC3-Mediated RNA Editing in Breast Cancer is Associated with Heightened Immune Activity and Improved Survival.

Authors:  Mariko Asaoka; Takashi Ishikawa; Kazuaki Takabe; Santosh K Patnaik
Journal:  Int J Mol Sci       Date:  2019-11-10       Impact factor: 5.923

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.