Literature DB >> 26666441

Complete genomic sequence of barley (Hordeum vulgare) endornavirus (HvEV) determined by next-generation sequencing.

Thierry Candresse1,2, Armelle Marais3,4, Roberto Sorrentino5, Chantal Faure3,4, Sébastien Theil3,4, Valérie Cadot6, Mathieu Rolland6, Julie Villemot6, Frank Rabenstein7.   

Abstract

Endornaviruses are unusual plant-, fungus- and oomycete-infecting viruses with a large, ca 14- to 17-kb linear double-stranded RNA (dsRNA) genome and a persistent lifestyle. The complete genome sequence of an endornavirus from the barley (Hordeum vulgare) Nerz variety was determined from paired Illumina MySeq reads derived from purified dsRNAs. The genome is 14,243 nt long, with 5' and 3' non-coding regions of 207 and 47 nt, respectively. It encodes a single large protein of 4663 amino acids that carries conserved motifs for a methyltransferase, a helicase and an RNA-dependent RNA polymerase. The sequence of Hordeum vulgare endornavirus (HvEV) carries all the hallmarks of a typical member of the genus Endornavirus, with the exception of an UDP-glycosyltransferase motif observed in many, but not all, endornaviral genomes.

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Year:  2015        PMID: 26666441     DOI: 10.1007/s00705-015-2709-3

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  7 in total

1.  Molecular and biological properties of an endornavirus infecting winged bean (Psophocarpus tetragonolobus).

Authors:  Ryo Okada; Eri Kiyota; Hiromitsu Moriyama; Toshiyuki Fukuhara; Rodrigo A Valverde
Journal:  Virus Genes       Date:  2016-10-06       Impact factor: 2.332

2.  Classical and next generation sequencing approaches unravel Bymovirus diversity in barley crops in France.

Authors:  Mathieu Rolland; Julie Villemot; Armelle Marais; Sébastien Theil; Chantal Faure; Valérie Cadot; Romain Valade; Cindy Vitry; Frank Rabenstein; Thierry Candresse
Journal:  PLoS One       Date:  2017-11-28       Impact factor: 3.240

3.  Pathogenic seedborne viruses are rare but Phaseolus vulgaris endornaviruses are common in bean varieties grown in Nicaragua and Tanzania.

Authors:  Noora Nordenstedt; Delfia Marcenaro; Daudi Chilagane; Beatrice Mwaipopo; Minna-Liisa Rajamäki; Susan Nchimbi-Msolla; Paul J R Njau; Deusdedith R Mbanzibwa; Jari P T Valkonen
Journal:  PLoS One       Date:  2017-05-25       Impact factor: 3.240

4.  Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves.

Authors:  Victor Golyaev; Thierry Candresse; Frank Rabenstein; Mikhail M Pooggin
Journal:  Sci Rep       Date:  2019-12-17       Impact factor: 4.379

5.  Identification of Viruses and Viroids Infecting Tomato and Pepper Plants in Vietnam by Metatranscriptomics.

Authors:  Hoseong Choi; Yeonhwa Jo; Won Kyong Cho; Jisuk Yu; Phu-Tri Tran; Lakha Salaipeth; Hae-Ryun Kwak; Hong-Soo Choi; Kook-Hyung Kim
Journal:  Int J Mol Sci       Date:  2020-10-13       Impact factor: 5.923

6.  Divergent RNA viruses in Macrophomina phaseolina exhibit potential as virocontrol agents.

Authors:  Jing Wang; Yunxia Ni; Xintao Liu; Hui Zhao; Yannong Xiao; Xueqiong Xiao; Shujun Li; Hongyan Liu
Journal:  Virus Evol       Date:  2020-12-18

7.  Barley RNA viromes in six different geographical regions in Korea.

Authors:  Yeonhwa Jo; Ju-Young Bae; Sang-Min Kim; Hoseong Choi; Bong Choon Lee; Won Kyong Cho
Journal:  Sci Rep       Date:  2018-09-05       Impact factor: 4.379

  7 in total

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