Literature DB >> 26666304

Mammalian-specific genomic functions: Newly acquired traits generated by genomic imprinting and LTR retrotransposon-derived genes in mammals.

Tomoko Kaneko-Ishino1, Fumitoshi Ishino.   

Abstract

Mammals, including human beings, have evolved a unique viviparous reproductive system and a highly developed central nervous system. How did these unique characteristics emerge in mammalian evolution, and what kinds of changes did occur in the mammalian genomes as evolution proceeded? A key conceptual term in approaching these issues is "mammalian-specific genomic functions", a concept covering both mammalian-specific epigenetics and genetics. Genomic imprinting and LTR retrotransposon-derived genes are reviewed as the representative, mammalian-specific genomic functions that are essential not only for the current mammalian developmental system, but also mammalian evolution itself. First, the essential roles of genomic imprinting in mammalian development, especially related to viviparous reproduction via placental function, as well as the emergence of genomic imprinting in mammalian evolution, are discussed. Second, we introduce the novel concept of "mammalian-specific traits generated by mammalian-specific genes from LTR retrotransposons", based on the finding that LTR retrotransposons served as a critical driving force in the mammalian evolution via generating mammalian-specific genes.

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Year:  2015        PMID: 26666304      PMCID: PMC4773580          DOI: 10.2183/pjab.91.511

Source DB:  PubMed          Journal:  Proc Jpn Acad Ser B Phys Biol Sci        ISSN: 0386-2208            Impact factor:   3.493


  145 in total

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Authors:  Tomoko Kaneko-Ishino; Fumitoshi Ishino
Journal:  Dev Growth Differ       Date:  2010-08       Impact factor: 2.053

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3.  RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus.

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Journal:  Curr Biol       Date:  2005-04-26       Impact factor: 10.834

4.  Conservation of the H19 noncoding RNA and H19-IGF2 imprinting mechanism in therians.

Authors:  Guillaume Smits; Andrew J Mungall; Sam Griffiths-Jones; Paul Smith; Delphine Beury; Lucy Matthews; Jane Rogers; Andrew J Pask; Geoff Shaw; John L VandeBerg; John R McCarrey; Marilyn B Renfree; Wolf Reik; Ian Dunham
Journal:  Nat Genet       Date:  2008-06-29       Impact factor: 38.330

5.  A serologic marker of paraneoplastic limbic and brain-stem encephalitis in patients with testicular cancer.

Authors:  R Voltz; S H Gultekin; M R Rosenfeld; E Gerstner; J Eichen; J B Posner; J Dalmau
Journal:  N Engl J Med       Date:  1999-06-10       Impact factor: 91.245

Review 6.  Autosomal and X-chromosome imprinting.

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Journal:  Dev Suppl       Date:  1990

7.  Zac1 (Lot1), a potential tumor suppressor gene, and the gene for epsilon-sarcoglycan are maternally imprinted genes: identification by a subtractive screen of novel uniparental fibroblast lines.

Authors:  G Piras; A El Kharroubi; S Kozlov; D Escalante-Alcalde; L Hernandez; N G Copeland; D J Gilbert; N A Jenkins; C L Stewart
Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

8.  The mouse insulin-like growth factor type-2 receptor is imprinted and closely linked to the Tme locus.

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Journal:  Nature       Date:  1991-01-03       Impact factor: 49.962

9.  Induction of mouse germ-cell fate by transcription factors in vitro.

Authors:  Fumio Nakaki; Katsuhiko Hayashi; Hiroshi Ohta; Kazuki Kurimoto; Yukihiro Yabuta; Mitinori Saitou
Journal:  Nature       Date:  2013-08-04       Impact factor: 49.962

10.  Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.

Authors:  Tarjei S Mikkelsen; Matthew J Wakefield; Bronwen Aken; Chris T Amemiya; Jean L Chang; Shannon Duke; Manuel Garber; Andrew J Gentles; Leo Goodstadt; Andreas Heger; Jerzy Jurka; Michael Kamal; Evan Mauceli; Stephen M J Searle; Ted Sharpe; Michelle L Baker; Mark A Batzer; Panayiotis V Benos; Katherine Belov; Michele Clamp; April Cook; James Cuff; Radhika Das; Lance Davidow; Janine E Deakin; Melissa J Fazzari; Jacob L Glass; Manfred Grabherr; John M Greally; Wanjun Gu; Timothy A Hore; Gavin A Huttley; Michael Kleber; Randy L Jirtle; Edda Koina; Jeannie T Lee; Shaun Mahony; Marco A Marra; Robert D Miller; Robert D Nicholls; Mayumi Oda; Anthony T Papenfuss; Zuly E Parra; David D Pollock; David A Ray; Jacqueline E Schein; Terence P Speed; Katherine Thompson; John L VandeBerg; Claire M Wade; Jerilyn A Walker; Paul D Waters; Caleb Webber; Jennifer R Weidman; Xiaohui Xie; Michael C Zody; Jennifer A Marshall Graves; Chris P Ponting; Matthew Breen; Paul B Samollow; Eric S Lander; Kerstin Lindblad-Toh
Journal:  Nature       Date:  2007-05-10       Impact factor: 49.962

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  10 in total

Review 1.  Transposable elements shape the evolution of mammalian development.

Authors:  Anna D Senft; Todd S Macfarlan
Journal:  Nat Rev Genet       Date:  2021-08-05       Impact factor: 53.242

2.  The Oldest Co-opted gag Gene of a Human Endogenous Retrovirus Shows Placenta-Specific Expression and Is Upregulated in Diffuse Large B-Cell Lymphomas.

Authors:  Guney Boso; Katherine Fleck; Samuel Carley; Qingping Liu; Alicia Buckler-White; Christine A Kozak
Journal:  Mol Biol Evol       Date:  2021-12-09       Impact factor: 8.800

3.  Neofunctionalization of a Noncoding Portion of a DNA Transposon in the Coding Region of the Chimerical Sex-Determining Gene dm-W in Xenopus Frogs.

Authors:  Shun Hayashi; Kosuke Suda; Fuga Fujimura; Makoto Fujikawa; Kei Tamura; Daisuke Tsukamoto; Ben J Evans; Nobuhiko Takamatsu; Michihiko Ito
Journal:  Mol Biol Evol       Date:  2022-07-02       Impact factor: 8.800

4.  HERV-Derived Ervpb1 Is Conserved in Simiiformes, Exhibiting Expression in Hematopoietic Cell Lineages Including Macrophages.

Authors:  Ayumi Matsuzawa; Jiyoung Lee; So Nakagawa; Johbu Itoh; Mahoko Takahashi Ueda; Satomi Mitsuhashi; Yuta Kochi; Tomoko Kaneko-Ishino; Fumitoshi Ishino
Journal:  Int J Mol Sci       Date:  2021-04-26       Impact factor: 5.923

Review 5.  Placental imprinting: Emerging mechanisms and functions.

Authors:  Courtney W Hanna
Journal:  PLoS Genet       Date:  2020-04-23       Impact factor: 5.917

6.  The role of eutherian-specific RTL1 in the nervous system and its implications for the Kagami-Ogata and Temple syndromes.

Authors:  Moe Kitazawa; Akito Sutani; Tomoko Kaneko-Ishino; Fumitoshi Ishino
Journal:  Genes Cells       Date:  2021-02-16       Impact factor: 1.891

Review 7.  The Evolutionary Advantage in Mammals of the Complementary Monoallelic Expression Mechanism of Genomic Imprinting and Its Emergence From a Defense Against the Insertion Into the Host Genome.

Authors:  Tomoko Kaneko-Ishino; Fumitoshi Ishino
Journal:  Front Genet       Date:  2022-03-03       Impact factor: 4.599

Review 8.  Endogenous Retroviruses and Placental Evolution, Development, and Diversity.

Authors:  Kazuhiko Imakawa; Kazuya Kusama; Tomoko Kaneko-Ishino; So Nakagawa; Koichi Kitao; Takayuki Miyazawa; Fumitoshi Ishino
Journal:  Cells       Date:  2022-08-08       Impact factor: 7.666

9.  An LTR Retrotransposon-Derived Gene Displays Lineage-Specific Structural and Putative Species-Specific Functional Variations in Eutherians.

Authors:  Masahito Irie; Akihiko Koga; Tomoko Kaneko-Ishino; Fumitoshi Ishino
Journal:  Front Chem       Date:  2016-06-23       Impact factor: 5.221

10.  Deficiency and overexpression of Rtl1 in the mouse cause distinct muscle abnormalities related to Temple and Kagami-Ogata syndromes.

Authors:  Moe Kitazawa; Shinichiro Hayashi; Michihiro Imamura; Shin'ichi Takeda; Yumiko Oishi; Tomoko Kaneko-Ishino; Fumitoshi Ishino
Journal:  Development       Date:  2020-09-02       Impact factor: 6.868

  10 in total

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