Literature DB >> 26656217

The Role of Standing Variation in Geographic Convergent Adaptation.

Peter L Ralph1, Graham Coop.   

Abstract

The extent to which populations experiencing shared selective pressures adapt through a shared genetic response is relevant to many questions in evolutionary biology. In this article, we explore how standing genetic variation contributes to convergent genetic responses in a geographically spread population. Geographically limited dispersal slows the spread of each selected allele, hence allowing other alleles to spread before any one comes to dominate the population. When selectively equivalent alleles meet, their progress is substantially slowed, dividing the species range into a random tessellation, which can be well understood by analogy to a Poisson process model of crystallization. In this framework, we derive the geographic scale over which an allele dominates and the proportion of adaptive alleles that arise from standing variation. Finally, we explore how negative pleiotropic effects of alleles can bias the subset of alleles that contribute to the species' adaptive response. We apply the results to the malaria-resistance glucose-6-phosphate dehydrogenase-deficiency alleles, where the large mutational target size makes it a likely candidate for adaptation from deleterious standing variation. Our results suggest that convergent adaptation may be common. Therefore, caution must be exercised when arguing that strongly geographically restricted alleles are the outcome of local adaptation. We close by discussing the implications of these results for ideas of species coherence and the nature of divergence between species.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26656217      PMCID: PMC4827716          DOI: 10.1086/682948

Source DB:  PubMed          Journal:  Am Nat        ISSN: 0003-0147            Impact factor:   3.926


  77 in total

1.  Haldane's sieve and adaptation from the standing genetic variation.

Authors:  H A Orr; A J Betancourt
Journal:  Genetics       Date:  2001-02       Impact factor: 4.562

2.  Adaptation and the cost of complexity.

Authors:  H A Orr
Journal:  Evolution       Date:  2000-02       Impact factor: 3.694

3.  Modularity and the cost of complexity.

Authors:  John J Welch; David Waxman
Journal:  Evolution       Date:  2003-08       Impact factor: 3.694

4.  Two steps forward, one step back: the pleiotropic effects of favoured alleles.

Authors:  Sarah P Otto
Journal:  Proc Biol Sci       Date:  2004-04-07       Impact factor: 5.349

Review 5.  How species evolve collectively: implications of gene flow and selection for the spread of advantageous alleles.

Authors:  Carrie L Morjan; Loren H Rieseberg
Journal:  Mol Ecol       Date:  2004-06       Impact factor: 6.185

6.  Soft sweeps: molecular population genetics of adaptation from standing genetic variation.

Authors:  Joachim Hermisson; Pleuni S Pennings
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

7.  The probability of parallel evolution.

Authors:  H Allen Orr
Journal:  Evolution       Date:  2005-01       Impact factor: 3.694

8.  Accumulation of Dobzhansky-Muller incompatibilities within a spatially structured population.

Authors:  Alexey S Kondrashov
Journal:  Evolution       Date:  2003-01       Impact factor: 3.694

Review 9.  The population genetics of the haemoglobinopathies.

Authors:  J Flint; R M Harding; A J Boyce; J B Clegg
Journal:  Baillieres Clin Haematol       Date:  1998-03

10.  Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance.

Authors:  S A Tishkoff; R Varkonyi; N Cahinhinan; S Abbes; G Argyropoulos; G Destro-Bisol; A Drousiotou; B Dangerfield; G Lefranc; J Loiselet; A Piro; M Stoneking; A Tagarelli; G Tagarelli; E H Touma; S M Williams; A G Clark
Journal:  Science       Date:  2001-06-21       Impact factor: 47.728

View more
  26 in total

Review 1.  Population genomics perspectives on convergent adaptation.

Authors:  Kristin M Lee; Graham Coop
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-06-03       Impact factor: 6.237

2.  The Relative Contributions of the X Chromosome and Autosomes to Local Adaptation.

Authors:  Clémentine Lasne; Carla M Sgrò; Tim Connallon
Journal:  Genetics       Date:  2017-01-06       Impact factor: 4.562

3.  Evolutionary origins of genomic adaptations in an invasive copepod.

Authors:  David Ben Stern; Carol Eunmi Lee
Journal:  Nat Ecol Evol       Date:  2020-06-22       Impact factor: 15.460

4.  Independent Molecular Basis of Convergent Highland Adaptation in Maize.

Authors:  Shohei Takuno; Peter Ralph; Kelly Swarts; Rob J Elshire; Jeffrey C Glaubitz; Edward S Buckler; Matthew B Hufford; Jeffrey Ross-Ibarra
Journal:  Genetics       Date:  2015-06-15       Impact factor: 4.562

Review 5.  Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions.

Authors:  Sean Hoban; Joanna L Kelley; Katie E Lotterhos; Michael F Antolin; Gideon Bradburd; David B Lowry; Mary L Poss; Laura K Reed; Andrew Storfer; Michael C Whitlock
Journal:  Am Nat       Date:  2016-08-15       Impact factor: 3.926

Review 6.  Germline Stem Cell Competition, Mutation Hot Spots, Genetic Disorders, and Older Fathers.

Authors:  Norman Arnheim; Peter Calabrese
Journal:  Annu Rev Genomics Hum Genet       Date:  2016-04-08       Impact factor: 8.929

Review 7.  Polygenic adaptation: a unifying framework to understand positive selection.

Authors:  Neda Barghi; Joachim Hermisson; Christian Schlötterer
Journal:  Nat Rev Genet       Date:  2020-06-29       Impact factor: 53.242

8.  Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives.

Authors:  Magdalena Bohutínská; Jakub Vlček; Sivan Yair; Benjamin Laenen; Veronika Konečná; Marco Fracassetti; Tanja Slotte; Filip Kolář
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-25       Impact factor: 11.205

9.  Phylogeographic and demographic modeling analyses of the multiple origins of the rheophytic goldenrod Solidago yokusaiana Makino.

Authors:  Ryuuta Kyan; Takuma Kimura; Tadashi Yamashiro; Shinji Fujii; Shota Sakaguchi; Motomi Ito; Atsushi J Nagano; Hiroshi Kudoh; Masayuki Maki
Journal:  Heredity (Edinb)       Date:  2021-01-28       Impact factor: 3.821

10.  Convergent Evolution During Local Adaptation to Patchy Landscapes.

Authors:  Peter L Ralph; Graham Coop
Journal:  PLoS Genet       Date:  2015-11-16       Impact factor: 5.917

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.