Michael Matschiner1. 1. Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway and Zoological Institute, University of Basel, Vesalgasse 1, Basel 4051, Switzerland.
Abstract
UNLABELLED: : In population genetics and phylogeography, haplotype genealogy graphs are important tools for the visualization of population structure based on sequence data. In this type of graph, node sizes are often drawn in proportion to haplotype frequencies and edge lengths represent the minimum number of mutations separating adjacent nodes. I here present Fitchi, a new program that produces publication-ready haplotype genealogy graphs based on the Fitch algorithm. AVAILABILITY AND IMPLEMENTATION: http://www.evoinformatics.eu/fitchi.htm CONTACT: : michaelmatschiner@mac.com SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
UNLABELLED: : In population genetics and phylogeography, haplotype genealogy graphs are important tools for the visualization of population structure based on sequence data. In this type of graph, node sizes are often drawn in proportion to haplotype frequencies and edge lengths represent the minimum number of mutations separating adjacent nodes. I here present Fitchi, a new program that produces publication-ready haplotype genealogy graphs based on the Fitch algorithm. AVAILABILITY AND IMPLEMENTATION: http://www.evoinformatics.eu/fitchi.htm CONTACT: : michaelmatschiner@mac.com SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Authors: Tore O Elgvin; Cassandra N Trier; Ole K Tørresen; Ingerid J Hagen; Sigbjørn Lien; Alexander J Nederbragt; Mark Ravinet; Henrik Jensen; Glenn-Peter Sætre Journal: Sci Adv Date: 2017-06-14 Impact factor: 14.136
Authors: Julia M I Barth; Malte Damerau; Michael Matschiner; Sissel Jentoft; Reinhold Hanel Journal: Genome Biol Evol Date: 2017-04-01 Impact factor: 3.416
Authors: Santiago G Ceballos; Marius Roesti; Michael Matschiner; Daniel A Fernández; Malte Damerau; Reinhold Hanel; Walter Salzburger Journal: BMC Evol Biol Date: 2019-01-10 Impact factor: 3.260
Authors: Oliver Kersten; Bastiaan Star; Deborah M Leigh; Tycho Anker-Nilssen; Hallvard Strøm; Jóhannis Danielsen; Sébastien Descamps; Kjell E Erikstad; Michelle G Fitzsimmons; Jérôme Fort; Erpur S Hansen; Mike P Harris; Martin Irestedt; Oddmund Kleven; Mark L Mallory; Kjetill S Jakobsen; Sanne Boessenkool Journal: Commun Biol Date: 2021-07-29