Literature DB >> 26652980

Resolving complex research data management issues in biomedical laboratories: Qualitative study of an industry-academia collaboration.

Sahiti Myneni1, Vimla L Patel2, G Steven Bova3, Jian Wang4, Christopher F Ackerman5, Cynthia A Berlinicke6, Steve H Chen4, Mikael Lindvall5, Donald J Zack7.   

Abstract

This paper describes a distributed collaborative effort between industry and academia to systematize data management in an academic biomedical laboratory. Heterogeneous and voluminous nature of research data created in biomedical laboratories make information management difficult and research unproductive. One such collaborative effort was evaluated over a period of four years using data collection methods including ethnographic observations, semi-structured interviews, web-based surveys, progress reports, conference call summaries, and face-to-face group discussions. Data were analyzed using qualitative methods of data analysis to (1) characterize specific problems faced by biomedical researchers with traditional information management practices, (2) identify intervention areas to introduce a new research information management system called Labmatrix, and finally to (3) evaluate and delineate important general collaboration (intervention) characteristics that can optimize outcomes of an implementation process in biomedical laboratories. Results emphasize the importance of end user perseverance, human-centric interoperability evaluation, and demonstration of return on investment of effort and time of laboratory members and industry personnel for success of implementation process. In addition, there is an intrinsic learning component associated with the implementation process of an information management system. Technology transfer experience in a complex environment such as the biomedical laboratory can be eased with use of information systems that support human and cognitive interoperability. Such informatics features can also contribute to successful collaboration and hopefully to scientific productivity.
Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Biomedical laboratory; Cognition; Industry–academia collaboration; Informatics implementation; Information management; Virtual research environment

Mesh:

Year:  2015        PMID: 26652980      PMCID: PMC4778387          DOI: 10.1016/j.cmpb.2015.11.001

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  23 in total

1.  Toward a framework for computer-mediated collaborative design in medical informatics.

Authors:  V L Patel; D R Kaufman; V G Allen; E H Shortliffe; J J Cimino; R A Greenes
Journal:  Methods Inf Med       Date:  1999-09       Impact factor: 2.176

2.  Heterogeneous database integration in biomedicine.

Authors:  W Sujansky
Journal:  J Biomed Inform       Date:  2001-08       Impact factor: 6.317

3.  High-content screening data management for drug discovery in a small- to medium-size laboratory: results of a collaborative pilot study focused on user expectations as indicators of effectiveness.

Authors:  Cynthia A Berlinicke; Christopher F Ackermann; Steve H Chen; Christoph Schulze; Yakov Shafranovich; Sahiti Myneni; Vimla L Patel; Jian Wang; Donald J Zack; Mikael Lindvall; G Steven Bova
Journal:  J Lab Autom       Date:  2012-01-24

4.  Assessment of collaboration and interoperability in an information management system to support bioscience research.

Authors:  Sahiti Myneni; Vimla L Patel
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

5.  Organization of Biomedical Data for Collaborative Scientific Research: A Research Information Management System.

Authors:  Sahiti Myneni; Vimla L Patel
Journal:  Int J Inf Manage       Date:  2010-06-01

Review 6.  Barriers to the acceptance of electronic medical records by physicians from systematic review to taxonomy and interventions.

Authors:  Albert Boonstra; Manda Broekhuis
Journal:  BMC Health Serv Res       Date:  2010-08-06       Impact factor: 2.655

Review 7.  Expanding the computational toolbox for mining cancer genomes.

Authors:  Li Ding; Michael C Wendl; Joshua F McMichael; Benjamin J Raphael
Journal:  Nat Rev Genet       Date:  2014-07-08       Impact factor: 53.242

8.  People and organizational issues in research systems implementation.

Authors:  Joan S Ash; Nicholas R Anderson; Peter Tarczy-Hornoch
Journal:  J Am Med Inform Assoc       Date:  2008-02-28       Impact factor: 4.497

9.  Integrating automated workflows, human intelligence and collaboration.

Authors:  Barbara Mirel; Felix Eichinger; Viji Nair; Matthias Kretzler
Journal:  Summit Transl Bioinform       Date:  2009-03-01

10.  PASSIM--an open source software system for managing information in biomedical studies.

Authors:  Juris Viksna; Edgars Celms; Martins Opmanis; Karlis Podnieks; Peteris Rucevskis; Andris Zarins; Amy Barrett; Sudeshna Guha Neogi; Maria Krestyaninova; Mark I McCarthy; Alvis Brazma; Ugis Sarkans
Journal:  BMC Bioinformatics       Date:  2007-02-09       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.