Literature DB >> 26651942

Evolution and Spread of Ebola Virus in Liberia, 2014-2015.

Jason T Ladner1, Michael R Wiley2, Suzanne Mate2, Gytis Dudas3, Karla Prieto2, Sean Lovett2, Elyse R Nagle2, Brett Beitzel2, Merle L Gilbert4, Lawrence Fakoli5, Joseph W Diclaro6, Randal J Schoepp7, Joseph Fair8, Jens H Kuhn9, Lisa E Hensley9, Daniel J Park10, Pardis C Sabeti11, Andrew Rambaut12, Mariano Sanchez-Lockhart2, Fatorma K Bolay5, Jeffrey R Kugelman2, Gustavo Palacios13.   

Abstract

The 2013-present Western African Ebola virus disease (EVD) outbreak is the largest ever recorded with >28,000 reported cases. Ebola virus (EBOV) genome sequencing has played an important role throughout this outbreak; however, relatively few sequences have been determined from patients in Liberia, the second worst-affected country. Here, we report 140 EBOV genome sequences from the second wave of the Liberian outbreak and analyze them in combination with 782 previously published sequences from throughout the Western African outbreak. While multiple early introductions of EBOV to Liberia are evident, the majority of Liberian EVD cases are consistent with a single introduction, followed by spread and diversification within the country. Movement of the virus within Liberia was widespread, and reintroductions from Liberia served as an important source for the continuation of the already ongoing EVD outbreak in Guinea. Overall, little evidence was found for incremental adaptation of EBOV to the human host.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Year:  2015        PMID: 26651942      PMCID: PMC4711363          DOI: 10.1016/j.chom.2015.11.008

Source DB:  PubMed          Journal:  Cell Host Microbe        ISSN: 1931-3128            Impact factor:   21.023


  38 in total

1.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Authors:  Stéphane Guindon; Jean-François Dufayard; Vincent Lefort; Maria Anisimova; Wim Hordijk; Olivier Gascuel
Journal:  Syst Biol       Date:  2010-03-29       Impact factor: 15.683

2.  IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.

Authors:  Zsuzsanna Dosztányi; Veronika Csizmok; Peter Tompa; István Simon
Journal:  Bioinformatics       Date:  2005-06-14       Impact factor: 6.937

3.  Conserved receptor-binding domains of Lake Victoria marburgvirus and Zaire ebolavirus bind a common receptor.

Authors:  Jens H Kuhn; Sheli R Radoshitzky; Alexander C Guth; Kelly L Warfield; Wenhui Li; Martin J Vincent; Jonathan S Towner; Stuart T Nichol; Sina Bavari; Hyeryun Choe; M Javad Aman; Michael Farzan
Journal:  J Biol Chem       Date:  2006-04-04       Impact factor: 5.157

Review 4.  Cross-species virus transmission and the emergence of new epidemic diseases.

Authors:  Colin R Parrish; Edward C Holmes; David M Morens; Eun-Chung Park; Donald S Burke; Charles H Calisher; Catherine A Laughlin; Linda J Saif; Peter Daszak
Journal:  Microbiol Mol Biol Rev       Date:  2008-09       Impact factor: 11.056

5.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

6.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

7.  Ectodomain shedding of the glycoprotein GP of Ebola virus.

Authors:  Olga Dolnik; Valentina Volchkova; Wolfgang Garten; Caroline Carbonnelle; Stephan Becker; Jörg Kahnt; Ute Ströher; Hans-Dieter Klenk; Viktor Volchkov
Journal:  EMBO J       Date:  2004-04-22       Impact factor: 11.598

8.  Bayesian phylogenetics with BEAUti and the BEAST 1.7.

Authors:  Alexei J Drummond; Marc A Suchard; Dong Xie; Andrew Rambaut
Journal:  Mol Biol Evol       Date:  2012-02-25       Impact factor: 16.240

9.  Quality control and preprocessing of metagenomic datasets.

Authors:  Robert Schmieder; Robert Edwards
Journal:  Bioinformatics       Date:  2011-01-28       Impact factor: 6.937

10.  Relaxed phylogenetics and dating with confidence.

Authors:  Alexei J Drummond; Simon Y W Ho; Matthew J Phillips; Andrew Rambaut
Journal:  PLoS Biol       Date:  2006-03-14       Impact factor: 8.029

View more
  51 in total

Review 1.  The evolution of Ebola virus: Insights from the 2013-2016 epidemic.

Authors:  Edward C Holmes; Gytis Dudas; Andrew Rambaut; Kristian G Andersen
Journal:  Nature       Date:  2016-10-13       Impact factor: 49.962

2.  Sequence-Independent, Single-Primer Amplification Next-Generation Sequencing of Hantaan Virus Cell Culture-Based Isolates.

Authors:  Dong Hyun Song; Won-Keun Kim; Se Hun Gu; Daesang Lee; Jeong-Ah Kim; Jin Sun No; Seung-Ho Lee; Michael R Wiley; Gustavo Palacios; Jin-Won Song; Seong Tae Jeong
Journal:  Am J Trop Med Hyg       Date:  2016-11-28       Impact factor: 2.345

3.  Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes.

Authors:  Steven Weaver; Stephen D Shank; Stephanie J Spielman; Michael Li; Spencer V Muse; Sergei L Kosakovsky Pond
Journal:  Mol Biol Evol       Date:  2018-03-01       Impact factor: 16.240

4.  Functional Characterization of Adaptive Mutations during the West African Ebola Virus Outbreak.

Authors:  Erik Dietzel; Gordian Schudt; Verena Krähling; Mikhail Matrosovich; Stephan Becker
Journal:  J Virol       Date:  2017-01-03       Impact factor: 5.103

5.  A Polymorphism within the Internal Fusion Loop of the Ebola Virus Glycoprotein Modulates Host Cell Entry.

Authors:  Markus Hoffmann; Lisa Crone; Erik Dietzel; Jennifer Paijo; Mariana González-Hernández; Inga Nehlmeier; Ulrich Kalinke; Stephan Becker; Stefan Pöhlmann
Journal:  J Virol       Date:  2017-04-13       Impact factor: 5.103

6.  Biochemical Basis for Increased Activity of Ebola Glycoprotein in the 2013-16 Epidemic.

Authors:  May K Wang; Sun-Young Lim; Soo Mi Lee; James M Cunningham
Journal:  Cell Host Microbe       Date:  2017-02-23       Impact factor: 21.023

Review 7.  Epidemiology and Management of the 2013-16 West African Ebola Outbreak.

Authors:  M L Boisen; J N Hartnett; A Goba; M A Vandi; D S Grant; J S Schieffelin; R F Garry; L M Branco
Journal:  Annu Rev Virol       Date:  2016-08-15       Impact factor: 10.431

8.  Urban Rodent Surveillance, Climatic Association, and Genomic Characterization of Seoul Virus Collected at U.S. Army Garrison, Seoul, Republic of Korea, 2006-2010.

Authors:  Heung-Chul Kim; Won-Keun Kim; Jin Sun No; Seung-Ho Lee; Se Hun Gu; Sung-Tae Chong; Terry A Klein; Jin-Won Song
Journal:  Am J Trop Med Hyg       Date:  2018-05-31       Impact factor: 2.345

9.  Mapping the clinical outcomes and genetic evolution of Ebola virus in Sierra Leone.

Authors:  Tao Li; Hong-Wu Yao; Di Liu; Hong-Guang Ren; Yi Hu; David Kargbo; Yue Teng; Yong-Qiang Deng; Hui-Jun Lu; Xiong Liu; Kun Liu; Li-Qun Fang; Nian-Zhi Ning; Gary Wong; Foday Dafae; Abdul Kamara; AiPing Wu; Tai-Jiao Jiang; Zhan Li; Jie Huang; Yu Sun; Jun Qian; Brima Kargbo; Jia-Fu Jiang; Hui Wang; Wu-Chun Cao
Journal:  JCI Insight       Date:  2017-08-03

10.  Recently Identified Mutations in the Ebola Virus-Makona Genome Do Not Alter Pathogenicity in Animal Models.

Authors:  Andrea Marzi; Spencer Chadinah; Elaine Haddock; Friederike Feldmann; Nicolette Arndt; Cynthia Martellaro; Dana P Scott; Patrick W Hanley; Tolbert G Nyenswah; Samba Sow; Moses Massaquoi; Heinz Feldmann
Journal:  Cell Rep       Date:  2018-05-08       Impact factor: 9.423

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.