Literature DB >> 26649268

DNA-based identification of Calendula officinalis (Asteraceae).

Corinna Schmiderer1, Brigitte Lukas1, Joana Ruzicka1, Johannes Novak1.   

Abstract

PREMISE OF THE STUDY: For the economically important species Calendula officinalis, a fast identification assay based on high-resolution melting curve analysis was designed. This assay was developed to distinguish C. officinalis from other species of the genus and other Asteraceae genera, and to detect C. officinalis as an adulterant of saffron samples. METHODS AND
RESULTS: For this study, five markers (ITS, rbcL, 5' trnK-matK, psbA-trnH, trnL-trnF) of 10 Calendula species were sequenced and analyzed for species-specific mutations. With the application of two developed primer pairs located in the trnK 5' intron and trnL-trnF, C. officinalis could be distinguished from other species of the genus and all outgroup samples tested. Adulterations of Calendula DNA in saffron could be detected down to 0.01%.
CONCLUSIONS: With the developed assay, C. officinalis can be reliably identified and admixtures of this species as adulterant of saffron can be revealed at low levels.

Entities:  

Keywords:  Asteraceae; Calendula; Calendula officinalis; high-resolution melting curve analysis (HRM); molecular phylogeny

Year:  2015        PMID: 26649268      PMCID: PMC4651632          DOI: 10.3732/apps.1500069

Source DB:  PubMed          Journal:  Appl Plant Sci        ISSN: 2168-0450            Impact factor:   1.936


Calendula L. (marigold) is the type genus of the small tribe Calenduleae (Asteraceae). While all other genera of the Calenduleae are native to southern Africa, Calendula is distributed in the Northern Hemisphere. Calendula species occur mainly in the Mediterranean area, from Morocco and Spain to Iran, southward to the Hoggar Mountains (Algeria) and Yemen (Norlindh, 1946), and northward to Germany and Poland. The center of distribution is northwestern Africa; eight species are listed in the Flora of northern Morocco (Valdés et al., 2002). The genus Calendula consists of 12 annual or perennial species, which are regarded as taxonomically complicated due to hybridizations (Norlindh, 1977; Heyn and Joel, 1983). Within the genus, C. officinalis L. (common marigold) is of special importance due to its use as an economic crop. Calendula officinalis flowers are used for pharmaceutical purposes (EDQM, 2014), in skin care products because of their anti-inflammatory activity (Talhouk et al., 2007), and as feed additives to improve the color of food because of their orange color (carotenoids) (Mukherjee et al., 2011). Florets of orange cultivars are also used as an adulterant of the expensive spice saffron (Marieschi et al., 2012). The fruits of C. officinalis are rich in fatty oil that has, because of its unusual composition, numerous technical applications (Zanetti et al., 2013). Common marigold is also an important ornamental plant with many cultivars. The flower heads are up to 5 cm in diameter, which is relatively large compared to other species of the genus. The flower heads vary from pastel yellow to deep orange, and several cultivars are double flowered. At present, the identification of C. officinalis is often performed by (high-performance) thin-layer chromatography (TLC) or by using morphological characters (EDQM, 2014; AHPA, 2015). To the best of our knowledge, DNA-based methods do not yet exist. It can be assumed that TLC is not able to distinguish all Calendula species, and that processed plant material (e.g., fine-cut or ground flowers) cannot be identified to species level by morphology. Therefore, a DNA-based method to identify this species has the potential to complement existing methods in quality control. High-resolution melting curve analysis (HRM) is based on the melting behavior of relatively short, double-stranded DNA fragments and is a fast and reliable post-PCR method to detect mutations like single-nucleotide polymorphisms (SNPs) or indels. With a slow, stepwise increase of temperature, a fluorescent dye incorporated between the two DNA strands is released depending on sequence, GC content, and length of PCR products, resulting in a specific melting curve (Ririe et al., 1997; Liew et al., 2004). Compared to sequencing standard barcode markers, the designed assay is much faster, less labor-intensive, and hence much cheaper. After only 2 h of PCR and subsequent HRM analysis, results are available. Furthermore, the short amplification products facilitate analysis of degraded DNA, as is often present in finely powdered material. Marieschi et al. (2012) developed sequence-characterized amplified region (SCAR) markers for the discrimination of saffron from several adulterants (including C. officinalis) and were able to detect adulterations of as little as 1%. Jiang et al. (2014) reported on a barcode melting curve analysis using general psbA-trnH primers for the same purpose. According to their methodology and results (extensively overlapping peaks of Calendula and saffron), we would suppose that the detection limit of Calendula adulterations is considerably higher than 1%. Both assays were not tested for the species-specificity of C. officinalis. The aim of this study was to develop a DNA-based assay to identify the economically important plant C. officinalis and to distinguish it from other species of the genus. The analysis of outgroup samples should demonstrate the specificity of the assay and improve the reliability of the results. Several outgroup species grow wild in Central Europe and are therefore potential contaminants as “weeds,” but frequent adulterations are not reported. Additionally, we tested whether the assay is able to detect C. officinalis as an adulterant in saffron samples.

METHODS AND RESULTS

DNA extraction

The sample set included dried leaves of 225 Calendula samples of 10 species, 63 outgroup samples of 14 genera (all Asteraceae), and three samples of saffron stigmata (Crocus sativus L., Iridaceae) (Appendix 1). Genomic DNA was extracted using a modified cetyltrimethylammonium bromide (CTAB) protocol (“CTAB method 1”; Schmiderer et al., 2013, based on Doyle and Doyle, 1990). This extraction included a mixture of 1 mL CTAB extraction buffer containing 27.4 mM CTAB, 0.7 M NaCl, 13.5 mM β-mercaptoethanol, 14.4 mM sodium dodecyl sulphate, 4.1 μg Proteinase K, 10 mg polyvinylpyrrolidone K30 (all reagents from Carl Roth GmbH, Karlsruhe, Germany), 1 mM EDTA (pH 8), and 10 mM Tris-HCl (pH 8) (Sigma-Aldrich, Vienna, Austria) per sample. For the DNA extraction of saffron samples, an additional washing step with 70% ethanol was performed.

Sequencing and sequence analysis

The nuclear internal transcribed spacer region (ITS), the chloroplast rbcL gene, and part of the matK gene, all commonly used DNA barcoding regions (Fazekas et al., 2012), and the trnK 5′ intron, trnL-trnF intergenic spacer, and the psbA-trnH intergenic spacer were sequenced from 22 samples of 10 Calendula species and two Dimorphotheca pluvialis (L.) Moench samples (GenBank accession no.: KM356075–KM356196, KM668487). For a 15-μL PCR reaction, 1 μL of genomic DNA (1:50 dilution of the original DNA extract, equivalent to approx. 1–50 ng) was added to a master mix containing 1× PCR buffer B, 2.5 mM MgCl2, 133 μM dNTP mix, 0.6 units Taq HOT FIREPol DNA Polymerase (all reagents from Solis BioDyne, Tartu, Estonia), and 0.6 μM forward and reverse primer (Life Technologies, Vienna, Austria). The PCR cycle profile included a denaturation step at 95°C for 15 min, followed by 45 cycles at 95/55/72°C for 45/45/90 s, with a final elongation step of 9 min at 72°C. PCR products were checked on 1.4% agarose gels and purified with ExoI and SAP (Fermentas, St. Leon-Roth, Germany) according to the manufacturer’s instructions. Sequencing was performed by Microsynth (Vienna, Austria) using the same primers as for the original amplification (Table 1). The obtained sequences were edited using Chromas version 2.24 (Technelysium, Tewantin, Australia) and aligned with MEGA6 (Tamura et al., 2013). The sequence analysis involved an alignment of 37 ITS sequences with a total of 641 positions (Appendix S1) and an alignment of 23 chloroplast sequences with a total of 2413 positions (Appendix S2). Each chloroplast sequence was a combination of the trnK 5′ intron, part of matK, trnL-trnF, psbA-trnH, and rbcL sequences of one sample. Candidate diagnostic nucleotides were identified using nucDiag from the R package Spider 1.3-0 (Brown et al., 2012).
Table 1.

Base composition of PCR, sequencing(*), and HRM primers used in this study.

Forward primerSequence (5′–3′)Reverse primerSequence (5′–3′)References
PCR and Sequencing
 ITS5*GGAAGGAGAAGTCGTAACAAGGITS4*TCCTTCCGCTTATTGATATGCWhite et al., 1990
 Cal_trnK_2F*CCCCCAAATCCTCTACCTTTC12 matK-1506RTTCCATAGAAATATATTCGJohnson and Soltis, 1994
 Cal_trnK_2F*CCCCCAAATCCTCTACCTTTC13 matK-1848RTATCGAACTTCTTAATAGCJohnson and Soltis, 1994
 matKf1ATACTCCTGAAAGATAAGTGGccmp1r*CCGAAGTCAAAAGAGCGATTHeinze, 2007 (matKf1); Weising and Gardner, 1999 (ccmp1r)
 trnL-trnF e*GGTTCAAGTCCCTCTATCCCtrnL-trnF fATTTGAACTGGTGACACGAGTaberlet et al., 1991
 psbA3′f*GTTATGCATGAACGTAATGCTCtrnHfCGCGCATGGTGGATTCACAATCCSang et al., 1997 (psbA3′f); Tate and Simpson, 2003 (trnHf)
 rbcLa_FATGTCACCACAAACAGAGACTAAAGCrbcL_ajf634R*GAAACGGTCTCTCCAACGCATLevin et al., 2003 (rbcLa_F); Fazekas et al., 2008 (rbcL_aj634R)
HRM Analysis
 Cal_trnK_2FaCCCCCAAATCCTCTACCTTTCCal_trnK_2RTCTAGCCCTAAATAGCTTTGGAATTThis study
 Cal_trnL-F_1FaTAAAAATGAACATCTTTGAGCAAGAACal_trnL-F_1RGAACGTGGGTCTATGTCAATTGThis study

Amplicon size: Cal_trnK_2F&R = 71 bp; Cal_trnL-F_1F&R = 126 bp.

Base composition of PCR, sequencing(*), and HRM primers used in this study. Amplicon size: Cal_trnK_2F&R = 71 bp; Cal_trnL-F_1F&R = 126 bp.

Primer design and HRM

HRM-suitable primers were designed based on the chloroplast trnK 5′ intron and trnL-trnF intergenic spacer alignments. Primers with an optimum melting temperature ranging from 56°C to 58°C were designed using Primer Express 2.0 (Applied Biosystems, Foster City, California, USA) (Table 1). HRM with preamplification was performed with a Rotor-Gene 6000 (QIAGEN, Hilden, Germany). For a 10-μL PCR reaction, 1 μL of genomic DNA (1:50 dilution of the original DNA extract, equivalent to approx. 1–50 ng) was added to a master mix containing 1× HOT FIREPol EvaGreen HRM Mix (no ROX) (Solis BioDyne) and 0.15 μM forward and reverse primers (Life Technologies). The PCR cycle profile included a denaturation step at 95°C for 15 min, followed by 45 cycles at 95/58/72°C for 10/20/20 s. The melting analysis was performed by increasing the temperature from 68°C to 82°C by 0.1°C/s. All reactions were done in duplicates. In each HRM run, reference samples for each expected curve type were included. The melting curves were analyzed using Rotor-Gene 6000 Series software (QIAGEN). The PCR efficiency (E) was calculated with a 10-fold dilution series following the formula E = 10^(−1/slope) − 1. The straight calibration line included five measuring points for each primer combination. The efficiency of the trnK primers was 93.0% (R2 = 0.9994), and the efficiency of the trnL-trnF primers was 78.5% (R2 = 0.9981).

Identification of C. officinalis

For C. officinalis, only one species-specific mutation could be found in all sequenced loci, located at position 211 of the trnK-matK alignment (Table 2). The confirmation of this diagnostic nucleotide was performed by developing HRM-suitable primers and testing an extensive sample set (Appendix 1). The primer pair Cal_trnK_2F&R was designed to amplify 71 bp of the trnK 5′ intron including this SNP (A/C transversion), which divided all Calendula samples into two groups. Group 1 consisted only of C. officinalis samples, and group 2 consisted of samples of all other Calendula species (Fig. 1A). One outgroup sample of Senecio L. sp. grouped with C. officinalis, whereas Tagetes patula L. and a part of the Anthemis tinctoria L. samples showed melting curves of group 2. The other outgroup samples formed three further groups with higher melting temperatures (Fig. 1B). The Helianthus L. samples showed poor amplification due to an indel in the primer-binding site and unspecific HRM curves. The primer pair Cal_trnL-F_1F&R amplifies 126 bp of the trnL-trnF intergenic spacer. Several SNPs divided the Calendula samples in three groups. Group I consisted of samples of C. maroccana (Ball) B. D. Jacks. and C. lanzae Maire, group II consisted of samples of C. eckerleinii Ohle and C. meuselii Ohle, and group III consisted of samples of C. officinalis and all other Calendula species (Fig. 1C). The tested outgroup samples showed many different melting curves, but all of them with higher melting temperatures than the Calendula samples, except Petasites Mill. spp. The latter showed melting curves very similar to C. officinalis but distinguishable from our target species by the trnK primers (Fig. 1D). The Tagetes L. samples showed an insufficient amplification resulting in unspecific HRM curves. With the application of both primer pairs, all samples of C. officinalis were reliably identified.
Table 2.

Diagnostic nucleotide candidates to distinguish individual species.

SpeciesnITStrnK-matKpsbA-trnHrbcLtrnL-trnF
Calendula arvensis700000
C. eckerleinii 1 0 01149 (C/A) 0 0
1166 (T/C)
C. incana subsp. microphylla1513 (T/C)254 (C/A)1199 (T/G)00
C. lanzae1104 (T/C)0000
C. maroccana100002260 (A/C)
C. meuselii10855 (C/T)002327 (A/G)
C. officinalis20211 (A/C)000
C. stellata200000
C. suffruticosa300000
C. tripterocarpa200000

Note: n = number of individuals.

Nucleotide position is given, with diagnostic nucleotides in parentheses; the first is the species-specific nucleotide.

Fig. 1.

HRM analysis based on two chloroplast markers. A. = Anthemis, Ad. = Adenostyles, C. = Calendula, Ci. = Cichorium, L. = Leucanthemum, T. perfor. = Tripleurospermum perforatum. (A) HRM analysis with the primer pair Cal_trnK_2F&R amplifying one species-specific SNP (A/C) located in the trnK 5′ intron, distinguishing Calendula officinalis samples from all other analyzed samples of the genus. (B) HRM analysis of outgroup samples with the primers Cal_trnK_2F&R. (C) HRM analysis with the primer pair Cal_trnL-F_1F&R of a 126-bp part of the trnL-trnF intergenic spacer including several SNPs. The Calendula samples were divided in three groups. Group I: C. maroccana and C. lanzae, group II: C. eckerleinii and C. meuselii, group III: C. officinalis and all other Calendula samples. (D) HRM analysis of outgroup samples with the primers Cal_trnL-F_1F&R. Group IV: Adenostyles glabra, Eupatorium cannabinum, E. perfoliatum, Matricaria nigellifolia, Scorzonera sp., Senecio sp. Group V: E. purpureum, Helianthus annuus. Group VI: Tanacetum vulgare. Group VII: Anthemis spp., Ci. intybus, Dimorphotheca pluvialis, Helianthus tuberosus, Leucanthemum vulgare, Matricaria spp., Tanacetum parthenium, Tripleurospermum perforatum. HRM curves of other Tanacetum samples appeared between V and VI (data not shown).

Diagnostic nucleotide candidates to distinguish individual species. Note: n = number of individuals. Nucleotide position is given, with diagnostic nucleotides in parentheses; the first is the species-specific nucleotide. HRM analysis based on two chloroplast markers. A. = Anthemis, Ad. = Adenostyles, C. = Calendula, Ci. = Cichorium, L. = Leucanthemum, T. perfor. = Tripleurospermum perforatum. (A) HRM analysis with the primer pair Cal_trnK_2F&R amplifying one species-specific SNP (A/C) located in the trnK 5′ intron, distinguishing Calendula officinalis samples from all other analyzed samples of the genus. (B) HRM analysis of outgroup samples with the primers Cal_trnK_2F&R. (C) HRM analysis with the primer pair Cal_trnL-F_1F&R of a 126-bp part of the trnL-trnF intergenic spacer including several SNPs. The Calendula samples were divided in three groups. Group I: C. maroccana and C. lanzae, group II: C. eckerleinii and C. meuselii, group III: C. officinalis and all other Calendula samples. (D) HRM analysis of outgroup samples with the primers Cal_trnL-F_1F&R. Group IV: Adenostyles glabra, Eupatorium cannabinum, E. perfoliatum, Matricaria nigellifolia, Scorzonera sp., Senecio sp. Group V: E. purpureum, Helianthus annuus. Group VI: Tanacetum vulgare. Group VII: Anthemis spp., Ci. intybus, Dimorphotheca pluvialis, Helianthus tuberosus, Leucanthemum vulgare, Matricaria spp., Tanacetum parthenium, Tripleurospermum perforatum. HRM curves of other Tanacetum samples appeared between V and VI (data not shown).

Detection of C. officinalis as an adulterant of saffron

For the detection of Calendula in saffron, artificial DNA admixture series of 0%, 0.0001%, 0.001%, 0.01%, 0.1%, 1%, 10%, and 100% C. officinalis DNA in Crocus sativus DNA were prepared and standardized to 10 ng/μL. Concentrations of the DNA extracts were determined using a NanoDrop ND-2000c (Peqlab Biotechnologie GmbH, Erlagen, Germany). For the mixture series, two different samples of saffron (Cal139 and Cal142) were used; each mixture series was prepared and tested twice. The amplification ability of the admixture series and pure saffron DNA was tested with both primer combinations. The homology of primer-binding sites in saffron was tested in silico with the most closely related, published sequences (trnK: Crocus banaticus Heuff. [GenBank accession no. JX903623.1], Crocus cartwrightianus Herb. [JX903624.1], Iris pseudacorus L. [KC118962.1]; trnL-trnF: Iris laevigata Fisch. [DQ286792.1]). Several mismatches in the primer-binding sites led to no or very poor, unspecific amplification products of saffron DNA. The analysis of the admixture series revealed that with both primer combinations, admixtures of above 0.01% C. officinalis (equivalent to 1 pg DNA, = limit of detection) were consistently identified as C. officinalis (Fig. 2A, C). In the qPCR, the admixtures showed an increase of the Cq value according to the decrease of the Calendula DNA concentration (Fig. 2B, D), while the HRM curves of samples containing between 1 pg and 100 ng DNA (introduced to PCR) were equal. Lower admixtures were amplified only randomly but showed, if properly amplified, in most cases an HRM curve like that of higher admixtures.
Fig. 2.

Analysis of artificial admixtures of Calendula officinalis in saffron. All properly amplified admixture samples showed an equivalent HRM curve like the C. officinalis references. (A) HRM analysis with the primer pair Cal_trnK_2F&R. (B) Amplification plot of the qPCR corresponding to A. (C) HRM analysis with the primer pair Cal_trnL-F_1F&R. (D) Amplification plot of the qPCR corresponding to B. %-Values mean proportion of C. officinalis DNA in saffron DNA of each sample. NTC = no template control.

Analysis of artificial admixtures of Calendula officinalis in saffron. All properly amplified admixture samples showed an equivalent HRM curve like the C. officinalis references. (A) HRM analysis with the primer pair Cal_trnK_2F&R. (B) Amplification plot of the qPCR corresponding to A. (C) HRM analysis with the primer pair Cal_trnL-F_1F&R. (D) Amplification plot of the qPCR corresponding to B. %-Values mean proportion of C. officinalis DNA in saffron DNA of each sample. NTC = no template control.

DISCUSSION

DNA barcoding has become an important technique for taxonomy, as well as in applications like quality (i.e., identity) control of food or herbal raw materials. Although genetic differences in the chloroplast set as well as in ITS were relatively small, one SNP was detected that distinguished the economically important target species C. officinalis from all other Calendula species. Testing our HRM assay with an extensive set of Asteraceae species revealed that one sample of Senecio sp. gave the same result as C. officinalis in the trnK primer combination. Therefore, a second assay in the trnL-trnF intergenic spacer was applied, to distinguish this Senecio sample from C. officinalis. The combination of both analyses had greater discriminatory power than just the trnK assay, although all closely related species could be distinguished with the trnK primers only. Additionally, this assay can be used to detect adulterations of saffron with Calendula flowers. Due to the high specificity of the used Calendula primers, even traces of marigold would be detected. Click here for additional data file. Click here for additional data file.
Appendix 1.

Locality and specimen information of reference samples used in this study.

SpeciesnHerbarium ID no. (Laboratory code)bCollection locality (Collection date)c
Calendula arvensis L.1Cal104Cultivated
C. arvensis1WU082667 (Cal119)WU: Turkey (5.4.2002)
C. arvensis1WU082668 (Cal120)WU: Jordan (9.3.1992)
C. arvensis1WU082669 (Cal121)WU: Italy (14.4.2004)
C. arvensis (C. micrantha)1WU082670 (Cal125)WU: Greece, Crete (24.4.1914)
C. arvensis (C. micrantha)1WU082671 (Cal126)WU: Greece, Crete (24.4.1914)
C. arvensis (C. persica)1WU082672 (Cal128)WU: Iran (24.4.1885)
C. arvensis3IPK-CAL 38Morocco, ACCID: 50036
C. arvensis6IPK-CAL 75Spain, ACCID: 98773
C. arvensis7IPK-CAL 82Egypt, ACCID: 247372
C. arvensis9IPK-CAL 27Italy, ACCID: 80458
C. arvensis10IPK-CAL 13Spain, ACCID: 77842
C. arvensis10IPK-CAL 40Morocco, ACCID: 50038
C. arvensis10IPK-CAL 42Greece, ACCID: 50040
C. arvensis12IPK-CAL 17Libya, ACCID: 82082
C. eckerleinii Ohle12IPK-CAL 9Morocco, ACCID: 49196
C. incana Willd. (C. tomentosa)1WU082676 (Cal132)WU: Tunisia (12.4.1913)
C. incana (C. tomentosa)1WU082677 (Cal133)WU: Tunisia (12.4.1913)
C. incana subsp. algarbiensis (Boiss.) Ohle1WU082673 (Cal122)WU: Portugal (12.8.1968)
C. incana subsp. microphylla (Lange) Ohle2WU082674 (Cal123), WU082675 (Cal124)WU: Portugal (8.4.1971)
C. lanzae Maire1IPK-CAL 41Morocco, ACCID: 50039
C. maroccana (Ball) B. D. Jacks.4IPK-CAL 95Morocco, ACCID: 236458
C. maroccana10IPK-CAL 29Cultivated, ACCID: 49214
C. meuselii Ohle9IPK-CAL 8Morocco, ACCID: 49195
C. officinalis L.1Cal101Cultivated at VMU
C. officinalis1Cal102Cultivated at VMU
C. officinalis1Cal103Cultivated
C. officinalis1WU08267 (Cal127)WU: cultivated at HBV
C. officinalis5Cal105-9Cultivated
C. officinalis12IPK-CAL 16Libya, ACCID: 81928
C. officinalis ‘Bico’1Cal118Cultivated at VMU
Calendula L. sp.5IPK-CAL 54Morocco, ACCID: 50052
Calendula sp.6IPK-CAL 53Morocco, ACCID: 50051
C. stellata Cav.1WU082679 (Cal129)WU: Morocco (17.4.2003)
C. stellata5IPK-CAL 45Morocco, ACCID: 50043
C. stellata5IPK-CAL 51Morocco, ACCID: 50049
C. stellata7IPK-CAL 98Morocco, ACCID: 236450
C. suffruticosa Vahl6IPK-CAL 63Tunisia, ACCID: 59220
C. suffruticosa6IPK-CAL 94Portugal, ACCID: 259716
C. suffruticosa6IPK-CAL 96Italy, ACCID: 259717
C. suffruticosa7IPK-CAL 44Algeria, ACCID: 50042
C. suffruticosa8IPK-CAL 22Italy, ACCID: 80066
C. suffruticosa9IPK-CAL 33Cultivated, ACCID: 50034
C. suffruticosa12IPK-CAL 15Algeria, ACCID: 49202
C. suffruticosa1WU027733 (Cal131)WU: Spain (9.3.2002)
C. suffruticosa1WU082680 (Cal130)WU: Morocco (21.4.2003)
C. tripterocarpa Rupr.1IPK-CAL 49Morocco, ACCID: 50047
C. tripterocarpa2WU082681 (Cal134-5)WU: Morocco (22.4.2003)
Adenostyles glabra DC.1Ast 06Austria, LA, Hohe Wand; 47°51′07″N, 16°02′31″E (5.5.2011)
Anthemis altissima L.1IPK-ANTHE 18Cultivated, ACCID: 49159
A. arvensis L.1IPK-ANTHE 7Cultivated, ACCID: 49154
A. austriaca Jaq.1Anth 01Austria, LA, Bisamberg; 48°19′00″N, 16°21′40″E (11.5.2015)
A. austriaca1IPK-ANTHE 17Cultivated, ACCID: 49158
A. cotula L.1IPK-ANTHE 10Cultivated, ACCID: 49156
A. tinctoria L.1IPK-ANTHE 25Armenia, ACCID: 57847
A. tinctoria1IPK-ANTHE 33Cultivated, ACCID: 236444
A. tinctoria1Rühl-Ant05xTrade sample
A. tinctoria2Anth 14Austria, LA, Kamptal; 48°37′51″N, 15°36′51″E (6.8.2011)
Cichorium intybus L.3Ast 03-5Austria, V, J. Baumann Gasse; 48°15′15″N, 16°25′54″E (23.6.2011)
Crocus sativus L.1Cal138Trade sample (Kotany)
C. sativus1Cal139Trade sample (Iran)
C. sativus1Cal142Trade sample (Greece)
Dimorphotheca pluvialis (L.) Moench1IPK-DIM 3Cultivated, ACCID: 86120
D. pluvialis7IPK-DIM 17Cultivated, ACCID: 258980
Eupatorium cannabinum L.1Ast 01Austria, V, Lainzer Tiergarten; 48°10′01″N, 16°15′15″E (5.5.2011)
E. cannabinum1Ast 02Austria, V, Wienerwald; 48°14′00″N, 16°16′16″E (7.5.2011)
E. cannabinum1Ast 07Austria, LA, Hohe Wand; 47°51′07″N, 16°02′31″E (21.6.2011)
E. cannabinum1Ast 08Austria, ST, Spielberg; 47°14′18″N, 14°47′06″E (10.7.2011)
E. cannabinum1Ast 15Austria, LA, Kamptal; 48°37′55″N, 15°36′49″E (6.8.2011)
E. perfoliatum L.1Rühl-Eup02Trade sample
E. purpureum L.1Rühl-Eup03Trade sample
Helianthus annuus L.1Cal111Cultivated, V, Siebensterngasse
H. tuberosus L.1Cal110Cultivated
Leucanthemum vulgare Lam. agg.1Anth 05Austria, LA, Hohe Wand; 47°50′08″N, 16°03′26″E (21.6.2011)
Matricaria disciformis (C. A. Mey.) DC.1IPK-TRIP 7Cultivated, ACCID: 49972
M. discoidea DC.1Anth 09-10Austria, ST, Spielberg; 47°13′10″N, 14°47′20″E (10.7.2011)
M. nigellifolia DC.1IPK-MAT 13Cultivated, ACCID: 49705
M. perforata Mérat1IPK-MAT 30Cultivated, ACCID: 87870
M. recutita L.1IPK-MAT 10Cultivated, ACCID: 49703
M. recutita1IPK-MAT 16Cultivated, ACCID: 49707
M. recutita1IPK-MAT 17Germany, ACCID: 49708
M. recutita1IPK-MAT 20Italy, ACCID: 81538
M. recutita1IPK-TRIP 8Bulgaria, ACCID: 50939
Petasites albus (L.) Gaertn.2Ast 11-2Austria, ST, Spielberg; 47°13′50″N, 14°46′39″E (24.4.2011)
P. hybridus (L.) G. Gaertn., B. Mey. & Scherb.1Ast 13Austria, ST, Spielberg; 47°14′05″N, 14°46′35″E (24.4.2011)
Scorzonera L. sp.1Ast 14Austria, LA, Groß Enzersdorf; 48°11′57″N, 16°33′45″E (15.5.2011)
Senecio L. sp.1Sen 01Austria, V, Baumgartner Höhe; 48°12′24″N, 16°16′50″E (7.5.2011)
Tagetes L. sp.6Cal112-7Cultivated, V, Siebensterngasse
Tanacetum balsamita L.1Rühl-Bal01Trade sample
T. balsamita1Rühl-Bal02Trade sample
T. corymbosum (L.) Sch. Bip.1Anth 02Austria, ST, Spielberg; 47°14′18″N, 14°47′6″E (10.7.2011)
T. corymbosum1Anth 03Austria, LA, Würnitz; 48°25′25″N, 16°26′18″E (22.6.2011)
T. corymbosum1Anth 11Austria, LA, Hollabrunn; 48°32′40″N, 16°06′11″E (12.7.2011)
T. parthenium (L.) Sch. Bip.1Rühl-Chr02Trade sample
T. vulgare L.1Anth 12Austria, LA, Kaltenleutgeben; 48°06′51″N, 16°12′50″E (16.7.2011)
T. vulgare1Anth 13Austria, LA, Kamptal; 48°37′51″N, 15°36′51″E (6.8.2011)
Tripleurospermum perforatum (Mérat) M. Laínz1Anth 04Austria, LA, Hollabrunn; 48°35′05″N, 16°03′55″E (25.6.2011)
T. perforatum2Anth 16-7Austria, LA, Kamptal; 48°37′51″N, 15°36′51″E (6.8.2011)

Note: n = number of individuals.

Voucher specimens (excluding those from WU) are stored at the herbarium of the Institute for Animal Nutrition and Functional Plant Compounds under the given herbarium ID numbers.

HBV = Botanical Garden of the University of Vienna, Austria; IPK = Leibniz Institute of Plant Genetics and Crop Plant Research Gatersleben, Germany. Accessions were received as seeds, which were raised in the University’s greenhouse in 2012. GPS coordinates of the specimen origins are not known.

ACCID = accession identification number (assigned by IPK); LA = Province Lower Austria; Rühl = Rühlemann’s Kräuter und Duftpflanzen, Horstedt, Germany; ST = Province Styria; V = Province Vienna; VMU = University of Veterinary Medicine, Vienna, Austria; WU = Herbarium of the University of Vienna, Austria. Collection dates are presented in the format: day.month.year. GPS coordinates of the specimen origins are not known.

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1.  Spider: an R package for the analysis of species identity and evolution, with particular reference to DNA barcoding.

Authors:  Samuel D J Brown; Rupert A Collins; Stephane Boyer; Marie-Caroline Lefort; Jagoba Malumbres-Olarte; Cor J Vink; Robert H Cruickshank
Journal:  Mol Ecol Resour       Date:  2012-01-16       Impact factor: 7.090

Review 2.  Anti-inflammatory bioactivities in plant extracts.

Authors:  R S Talhouk; C Karam; S Fostok; W El-Jouni; E K Barbour
Journal:  J Med Food       Date:  2007-03       Impact factor: 2.786

3.  Universal primers for amplification of three non-coding regions of chloroplast DNA.

Authors:  P Taberlet; L Gielly; G Pautou; J Bouvet
Journal:  Plant Mol Biol       Date:  1991-11       Impact factor: 4.076

4.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

5.  Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae).

Authors:  T Sang; D Crawford; T Stuessy
Journal:  Am J Bot       Date:  1997-08       Impact factor: 3.844

6.  Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data.

Authors:  Rachel A Levin; Warren L Wagner; Peter C Hoch; Molly Nepokroeff; J Chris Pires; Elizabeth A Zimmer; Kenneth J Sytsma
Journal:  Am J Bot       Date:  2003-01       Impact factor: 3.844

7.  Product differentiation by analysis of DNA melting curves during the polymerase chain reaction.

Authors:  K M Ririe; R P Rasmussen; C T Wittwer
Journal:  Anal Biochem       Date:  1997-02-15       Impact factor: 3.365

8.  Quality control of saffron (Crocus sativus L.): development of SCAR markers for the detection of plant adulterants used as bulking agents.

Authors:  Matteo Marieschi; Anna Torelli; Renato Bruni
Journal:  J Agric Food Chem       Date:  2012-10-23       Impact factor: 5.279

9.  A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms.

Authors:  K Weising; R C Gardner
Journal:  Genome       Date:  1999-02       Impact factor: 2.166

10.  Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well.

Authors:  Aron J Fazekas; Kevin S Burgess; Prasad R Kesanakurti; Sean W Graham; Steven G Newmaster; Brian C Husband; Diana M Percy; Mehrdad Hajibabaei; Spencer C H Barrett
Journal:  PLoS One       Date:  2008-07-30       Impact factor: 3.240

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1.  Candidate DNA Barcode Tags Combined With High Resolution Melting (Bar-HRM) Curve Analysis for Authentication of Senna alexandrina Mill. With Validation in Crude Drugs.

Authors:  Priyanka Mishra; Ashutosh K Shukla; Velusamy Sundaresan
Journal:  Front Plant Sci       Date:  2018-03-13       Impact factor: 5.753

  1 in total

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