Literature DB >> 26647059

Tudor-domain containing proteins act to make the piRNA pathways more robust in Drosophila.

Kaoru Sato1, Yuka W Iwasaki2, Haruhiko Siomi2, Mikiko C Siomi1.   

Abstract

PIWI-interacting RNAs (piRNAs), a subset of small non-coding RNAs enriched in animal gonads, repress transposons by assembling with PIWI proteins to form potent gene-silencing RNP complexes, piRISCs. Accumulating evidence suggests that piRNAs are produced through three interdependent pathways; the de novo primary pathway, the ping-pong pathway, and the phased primary pathway. The de novo primary pathway in Drosophila ovaries produces primary piRNAs for two PIWI members, Piwi and Aub. Aub then initiates the ping-pong pathway to produce secondary piRNAs for AGO3. AGO3-slicer dependent cleavage subsequently produces secondary piRNAs for Aub. Trailer products of AGO3-slicer activity are consumed by the phased primary pathway to increase the Piwi-bound piRNA population. All these pathways are regulated by a number of piRNA factors in a highly coordinated fashion. Recent studies show that two Tudor-domain containing piRNA factors, Krimper (Krimp) and Qin/Kumo, play crucial roles in making Aub-AGO3 heterotypic ping-pong robust. This maintains the levels of piRNAs loaded onto Piwi and Aub to efficiently repress transposons at transcriptional and post-transcriptional levels, respectively.

Entities:  

Keywords:  PIWI; Qin; Transposon; Tudor domain; krimp; piRNA; ping-pong

Mesh:

Substances:

Year:  2015        PMID: 26647059      PMCID: PMC4826119          DOI: 10.1080/19336934.2015.1128599

Source DB:  PubMed          Journal:  Fly (Austin)        ISSN: 1933-6934            Impact factor:   2.160


  49 in total

1.  Separation of stem cell maintenance and transposon silencing functions of Piwi protein.

Authors:  Mikhail S Klenov; Olesya A Sokolova; Evgeny Y Yakushev; Anastasia D Stolyarenko; Elena A Mikhaleva; Sergey A Lavrov; Vladimir A Gvozdev
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-07       Impact factor: 11.205

2.  zucchini and squash encode two putative nucleases required for rasiRNA production in the Drosophila germline.

Authors:  Attilio Pane; Kristina Wehr; Trudi Schüpbach
Journal:  Dev Cell       Date:  2007-06       Impact factor: 12.270

Review 3.  PIWI-interacting small RNAs: the vanguard of genome defence.

Authors:  Mikiko C Siomi; Kaoru Sato; Dubravka Pezic; Alexei A Aravin
Journal:  Nat Rev Mol Cell Biol       Date:  2011-04       Impact factor: 94.444

Review 4.  PIWI-Interacting RNA: Its Biogenesis and Functions.

Authors:  Yuka W Iwasaki; Mikiko C Siomi; Haruhiko Siomi
Journal:  Annu Rev Biochem       Date:  2015-03-05       Impact factor: 23.643

5.  Arginine methylation of Aubergine mediates Tudor binding and germ plasm localization.

Authors:  Yohei Kirino; Anastassios Vourekas; Nabil Sayed; Flavia de Lima Alves; Travis Thomson; Paul Lasko; Juri Rappsilber; Thomas A Jongens; Zissimos Mourelatos
Journal:  RNA       Date:  2009-11-19       Impact factor: 4.942

6.  Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary.

Authors:  Colin D Malone; Julius Brennecke; Monica Dus; Alexander Stark; W Richard McCombie; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2009-04-23       Impact factor: 41.582

7.  Multiple roles for Piwi in silencing Drosophila transposons.

Authors:  Nikolay V Rozhkov; Molly Hammell; Gregory J Hannon
Journal:  Genes Dev       Date:  2013-02-07       Impact factor: 11.361

8.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

9.  Heterotypic piRNA Ping-Pong requires qin, a protein with both E3 ligase and Tudor domains.

Authors:  Zhao Zhang; Jia Xu; Birgit S Koppetsch; Jie Wang; Cindy Tipping; Shengmei Ma; Zhiping Weng; William E Theurkauf; Phillip D Zamore
Journal:  Mol Cell       Date:  2011-11-18       Impact factor: 17.970

Review 10.  Small silencing RNAs: an expanding universe.

Authors:  Megha Ghildiyal; Phillip D Zamore
Journal:  Nat Rev Genet       Date:  2009-02       Impact factor: 53.242

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  7 in total

1.  A novel transposable element-mediated mechanism causes antiviral resistance in Drosophila through truncating the Veneno protein.

Authors:  Osama Brosh; Daniel K Fabian; Rodrigo Cogni; Ignacio Tolosana; Jonathan P Day; Francesca Olivieri; Manon Merckx; Nazli Akilli; Piotr Szkuta; Francis M Jiggins
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-11       Impact factor: 12.779

2.  Daphnia magna egg piRNA cluster expression profiles change as mothers age.

Authors:  Jack Hearn; Tom J Little
Journal:  BMC Genomics       Date:  2022-06-08       Impact factor: 4.547

3.  Recurrent Gene Duplication Diversifies Genome Defense Repertoire in Drosophila.

Authors:  Mia T Levine; Helen M Vander Wende; Emily Hsieh; EmilyClare P Baker; Harmit S Malik
Journal:  Mol Biol Evol       Date:  2016-03-14       Impact factor: 16.240

Review 4.  Biogenesis of diverse plant phasiRNAs involves an miRNA-trigger and Dicer-processing.

Authors:  Reina Komiya
Journal:  J Plant Res       Date:  2016-11-29       Impact factor: 2.629

5.  Identification of piRNAs and piRNA clusters in the testes of the Mongolian horse.

Authors:  Bei Li; Xiaolong He; Yiping Zhao; Dongyi Bai; Gerelchimeg Bou; Xinzhuang Zhang; Shaofeng Su; Leng Dao; Rui Liu; Yuejiao Wang; Dugarjaviin Manglai
Journal:  Sci Rep       Date:  2019-03-22       Impact factor: 4.379

6.  Binding of guide piRNA triggers methylation of the unstructured N-terminal region of Aub leading to assembly of the piRNA amplification complex.

Authors:  Xiawei Huang; Hongmiao Hu; Alexandre Webster; Fan Zou; Jiamu Du; Dinshaw J Patel; Ravi Sachidanandam; Katalin Fejes Toth; Alexei A Aravin; Sisi Li
Journal:  Nat Commun       Date:  2021-07-01       Impact factor: 14.919

7.  Piwi suppresses transcription of Brahma-dependent transposons via Maelstrom in ovarian somatic cells.

Authors:  Ryo Onishi; Kaoru Sato; Kensaku Murano; Lumi Negishi; Haruhiko Siomi; Mikiko C Siomi
Journal:  Sci Adv       Date:  2020-12-11       Impact factor: 14.957

  7 in total

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