Literature DB >> 26643775

Deinococcus actinosclerus sp. nov., a novel bacterium isolated from soil of a rocky hillside.

Eun Sun Joo1, Jae Jin Lee1, Myung-Suk Kang2, Sangyong Lim3, Sun-Wook Jeong3, Eun Bit Kim1, Seon Hwa Jeon1, Sathiyaraj Srinivasan1, Myung Kyum Kim1.   

Abstract

Three Gram-stain-positive, catalase- and oxidase-positive coccus- or rod-shaped bacterial strains, designated BM2T, BM4 and BM5, were isolated from soil in South Korea. They showed strong resistance to gamma radiation with a D10 value of 9 kGy but weak UVC resistance. The 16S rRNA sequences of strains BM2T, BM4 and BM5 represent a novel subline within the genus Deinococcus in the family Deinococcaceae. The 16S rRNA gene sequences of strains BM2T, BM4 and BM5 were indistinguishable and showed 98.1-87.3 % similarity with other species of the genus Deinococcus. Strain BM2T exhibited relatively high levels of DNA-DNA hybridization with BM4 (87 ± 0.8 %) and BM5 (92 ± 1.2 %). Meanwhile, it showed a low level of DNA-DNA hybridization ( < 30 %) with other closely related species of the genus Deinococcus. The strains showed the typical chemotaxonomic characteristics of the genus Deinococcus, with the presence of menaquinone 8 as the respiratory quinone; the major fatty acids were summed feature 3 (composed of C16 : 1ω7c/C16 : 1ω6c), C15 : 1ω6c and C16 : 0. The DNA G+C content of strain BM2T was 69.7 mol%. The polar lipid profile included major amounts of phosphatidylglycerol, phosphatidylcholine and an unknown aminolipid. On the basis of phenotypic and genotypic properties, and phylogenetic distinctiveness, strains BM2T, BM4 and BM5 should be classified in a novel species in the genus Deinococcus, for which the name Deinococcus actinosclerus sp. nov. is proposed. The type strain is BM2T ( = KEMB 5401-184T = JCM 30700T); reference strains are BM4 ( = JCM 30701) and BM5 ( = JCM 30702).

Entities:  

Year:  2015        PMID: 26643775     DOI: 10.1099/ijsem.0.000825

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  5 in total

1.  Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.

Authors:  Marina García-López; Jan P Meier-Kolthoff; Brian J Tindall; Sabine Gronow; Tanja Woyke; Nikos C Kyrpides; Richard L Hahnke; Markus Göker
Journal:  Front Microbiol       Date:  2019-09-23       Impact factor: 5.640

Review 2.  Conservation and diversity of radiation and oxidative stress resistance mechanisms in Deinococcus species.

Authors:  Sangyong Lim; Jong-Hyun Jung; Laurence Blanchard; Arjan de Groot
Journal:  FEMS Microbiol Rev       Date:  2019-01-01       Impact factor: 16.408

3.  DrwH, a novel WHy domain-containing hydrophobic LEA5C protein from Deinococcus radiodurans, protects enzymatic activity under oxidative stress.

Authors:  Shijie Jiang; Jin Wang; Xiaoli Liu; Yingying Liu; Cui Guo; Liwen Zhang; Jiahui Han; Xiaoli Wu; Dong Xue; Ahmed E Gomaa; Shuai Feng; Heng Zhang; Yun Chen; Shuzhen Ping; Ming Chen; Wei Zhang; Liang Li; Zhengfu Zhou; Kaijing Zuo; Xufeng Li; Yi Yang; Min Lin
Journal:  Sci Rep       Date:  2017-08-24       Impact factor: 4.379

4.  Molecular response of Deinococcus radiodurans to simulated microgravity explored by proteometabolomic approach.

Authors:  Emanuel Ott; Felix M Fuchs; Ralf Moeller; Ruth Hemmersbach; Yuko Kawaguchi; Akihiko Yamagishi; Wolfram Weckwerth; Tetyana Milojevic
Journal:  Sci Rep       Date:  2019-12-05       Impact factor: 4.379

5.  Draft genome sequence of Deinococcus sp. KR-1, a potential strain for palladium-leaching.

Authors:  Hironaga Akita; Yuya Itoiri; Akio Kumagai; Noriyo Takeda; Akinori Matsushika; Mamoru Oshiki; Zen-Ichiro Kimura
Journal:  J Genomics       Date:  2020-02-10
  5 in total

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