Literature DB >> 26637452

Dimerization of the SP1 Region of HIV-1 Gag Induces a Helical Conformation and Association into Helical Bundles: Implications for Particle Assembly.

Siddhartha A K Datta1, Patrick K Clark2, Lixin Fan3, Buyong Ma4, Demetria P Harvin5, Raymond C Sowder6, Ruth Nussinov7, Yun-Xing Wang8, Alan Rein1.   

Abstract

UNLABELLED: HIV-1 immature particle (virus-like particle [VLP]) assembly is mediated largely by interactions between the capsid (CA) domains of Gag molecules but is facilitated by binding of the nucleocapsid (NC) domain to nucleic acid. We previously investigated the role of SP1, a "spacer" between CA and NC, in VLP assembly. We found that small changes in SP1 drastically disrupt assembly and that a peptide representing the sequence around the CA-SP1 junction is helical at high but not low concentrations. We suggested that by virtue of such a concentration-dependent change, this region could act as a molecular switch to activate HIV-1 Gag for VLP assembly. A leucine zipper domain can replace NC in Gag and still lead to the efficient assembly of VLPs. We find that SP1 mutants also disrupt assembly by these Gag-Zip proteins and have now studied a small fragment of this Gag-Zip protein, i.e., the CA-SP1 junction region fused to a leucine zipper. Dimerization of the zipper places SP1 at a high local concentration, even at low total concentrations. In this context, the CA-SP1 junction region spontaneously adopts a helical conformation, and the proteins associate into tetramers. Tetramerization requires residues from both CA and SP1. The data suggest that once this region becomes helical, its propensity to self-associate could contribute to Gag-Gag interactions and thus to particle assembly. There is complete congruence between CA/SP1 sequences that promote tetramerization when fused to zippers and those that permit the proper assembly of full-length Gag; thus, equivalent interactions apparently participate in VLP assembly and in SP1-Zip tetramerization. IMPORTANCE: Assembly of HIV-1 Gag into virus-like particles (VLPs) appears to require an interaction with nucleic acid, but replacement of its principal nucleic acid-binding domain with a dimerizing leucine zipper domain leads to the assembly of RNA-free VLPs. It has not been clear how dimerization triggers assembly. Results here show that the SP1 region spontaneously switches to a helical state when fused to a leucine zipper and that these helical molecules further associate into tetramers, mediated by interactions between hydrophobic faces of the helices. Thus, the correct juxtaposition of the SP1 region makes it "association competent." Residues from both capsid and SP1 contribute to tetramerization, while mutations disrupting proper assembly in Gag also prevent tetramerization. Thus, this region is part of an associating interface within Gag, and its intermolecular interactions evidently help stabilize the immature Gag lattice. These interactions are disrupted by proteolysis of the CA-SP1 junction during virus maturation.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2015        PMID: 26637452      PMCID: PMC4733982          DOI: 10.1128/JVI.02061-15

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  43 in total

1.  Modulation of HIV-like particle assembly in vitro by inositol phosphates.

Authors:  S Campbell; R J Fisher; E M Towler; S Fox; H J Issaq; T Wolfe; L R Phillips; A Rein
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-28       Impact factor: 11.205

2.  Nucleic acid-independent retrovirus assembly can be driven by dimerization.

Authors:  Marc C Johnson; Heather M Scobie; Yu May Ma; Volker M Vogt
Journal:  J Virol       Date:  2002-11       Impact factor: 5.103

3.  New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations.

Authors:  Michael S Lee; Michael Feig; Freddie R Salsbury; Charles L Brooks
Journal:  J Comput Chem       Date:  2003-08       Impact factor: 3.376

4.  Efficient particle production by minimal Gag constructs which retain the carboxy-terminal domain of human immunodeficiency virus type 1 capsid-p2 and a late assembly domain.

Authors:  M A Accola; B Strack; H G Göttlinger
Journal:  J Virol       Date:  2000-06       Impact factor: 5.103

5.  A conformational switch controlling HIV-1 morphogenesis.

Authors:  I Gross; H Hohenberg; T Wilk; K Wiegers; M Grättinger; B Müller; S Fuller; H G Kräusslich
Journal:  EMBO J       Date:  2000-01-04       Impact factor: 11.598

6.  Anti-human immunodeficiency virus activity of YK-FH312 (a betulinic acid derivative), a novel compound blocking viral maturation.

Authors:  T Kanamoto; Y Kashiwada; K Kanbara; K Gotoh; M Yoshimori; T Goto; K Sano; H Nakashima
Journal:  Antimicrob Agents Chemother       Date:  2001-04       Impact factor: 5.191

7.  Characterization of a putative alpha-helix across the capsid-SP1 boundary that is critical for the multimerization of human immunodeficiency virus type 1 gag.

Authors:  Chen Liang; Jing Hu; Rodney S Russell; Ariel Roldan; Lawrence Kleiman; Mark A Wainberg
Journal:  J Virol       Date:  2002-11       Impact factor: 5.103

8.  Rous sarcoma virus Gag protein-oligonucleotide interaction suggests a critical role for protein dimer formation in assembly.

Authors:  Yu May Ma; Volker M Vogt
Journal:  J Virol       Date:  2002-06       Impact factor: 5.103

9.  PA-457: a potent HIV inhibitor that disrupts core condensation by targeting a late step in Gag processing.

Authors:  F Li; R Goila-Gaur; K Salzwedel; N R Kilgore; M Reddick; C Matallana; A Castillo; D Zoumplis; D E Martin; J M Orenstein; G P Allaway; E O Freed; C T Wild
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-22       Impact factor: 11.205

10.  Charged assembly helix motif in murine leukemia virus capsid: an important region for virus assembly and particle size determination.

Authors:  Sara Rasmussen Cheslock; Dexter T K Poon; William Fu; Terence D Rhodes; Louis E Henderson; Kunio Nagashima; Connor F McGrath; Wei-Shau Hu
Journal:  J Virol       Date:  2003-06       Impact factor: 5.103

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  25 in total

1.  Interactions between HIV-1 Gag and Viral RNA Genome Enhance Virion Assembly.

Authors:  Kari A Dilley; Olga A Nikolaitchik; Andrea Galli; Ryan C Burdick; Louis Levine; Kelvin Li; Alan Rein; Vinay K Pathak; Wei-Shau Hu
Journal:  J Virol       Date:  2017-07-27       Impact factor: 5.103

2.  HIV-1 Gag protein with or without p6 specifically dimerizes on the viral RNA packaging signal.

Authors:  Samantha Sarni; Banhi Biswas; Shuohui Liu; Erik D Olson; Jonathan P Kitzrow; Alan Rein; Vicki H Wysocki; Karin Musier-Forsyth
Journal:  J Biol Chem       Date:  2020-08-13       Impact factor: 5.157

3.  Immature HIV-1 lattice assembly dynamics are regulated by scaffolding from nucleic acid and the plasma membrane.

Authors:  Alexander J Pak; John M A Grime; Prabuddha Sengupta; Antony K Chen; Aleksander E P Durumeric; Anand Srivastava; Mark Yeager; John A G Briggs; Jennifer Lippincott-Schwartz; Gregory A Voth
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-07       Impact factor: 11.205

4.  Nucleic acid-induced dimerization of HIV-1 Gag protein.

Authors:  Huaying Zhao; Siddhartha A K Datta; Sung H Kim; Samuel C To; Sumit K Chaturvedi; Alan Rein; Peter Schuck
Journal:  J Biol Chem       Date:  2019-09-30       Impact factor: 5.157

5.  Helical Conformation in the CA-SP1 Junction of the Immature HIV-1 Lattice Determined from Solid-State NMR of Virus-like Particles.

Authors:  Marvin J Bayro; Barbie K Ganser-Pornillos; Kaneil K Zadrozny; Mark Yeager; Robert Tycko
Journal:  J Am Chem Soc       Date:  2016-09-07       Impact factor: 15.419

Review 6.  Molecular Architecture of the Retroviral Capsid.

Authors:  Juan R Perilla; Angela M Gronenborn
Journal:  Trends Biochem Sci       Date:  2016-03-30       Impact factor: 13.807

Review 7.  Retroviral Gag protein-RNA interactions: Implications for specific genomic RNA packaging and virion assembly.

Authors:  Erik D Olson; Karin Musier-Forsyth
Journal:  Semin Cell Dev Biol       Date:  2018-04-01       Impact factor: 7.727

Review 8.  Viral structural proteins as targets for antivirals.

Authors:  Christopher John Schlicksup; Adam Zlotnick
Journal:  Curr Opin Virol       Date:  2020-08-07       Impact factor: 7.090

9.  Natural Occurring Polymorphisms in HIV-1 Integrase and RNase H Regulate Viral Release and Autoprocessing.

Authors:  Tomozumi Imamichi; John G Bernbaum; Sylvain Laverdure; Jun Yang; Qian Chen; Helene Highbarger; Ming Hao; Hongyan Sui; Robin Dewar; Weizhong Chang; H Clifford Lane
Journal:  J Virol       Date:  2021-09-15       Impact factor: 5.103

10.  The HIV-Tat protein interacts with Sp3 transcription factor and inhibits its binding to a distal site of the sod2 promoter in human pulmonary artery endothelial cells.

Authors:  Terrin L Manes; Ari Simenauer; Jason L Geohring; Juliana Flemming; Michael Brehm; Adela Cota-Gomez
Journal:  Free Radic Biol Med       Date:  2019-12-19       Impact factor: 7.376

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