Literature DB >> 26636366

Quantum Chemical Modeling of the Dehalogenation Reaction of Haloalcohol Dehalogenase.

Kathrin H Hopmann1, Fahmi Himo1.   

Abstract

The dehalogenation reaction of haloalcohol dehalogenase HheC from Agrobacterium radiobacter AD1 was investigated theoretically using hybrid density functional theory methods. HheC catalyzes the enantioselective conversion of halohydrins into their corresponding epoxides. The reaction is proposed to be mediated by a catalytic Ser132-Tyr145-Arg149 triad, and a distinct halide binding site is suggested to facilitate halide displacement by stabilizing the free ion. We investigated the HheC-mediated dehalogenation of (R)-2-chloro-1-phenylethanol using three quantum chemical models of various sizes. The calculated barriers and reaction energies give support to the suggested reaction mechanism. The dehalogenation occurs in a single concerted step, in which Tyr145 abstracts a proton from the halohydrin substrate and the substrate oxyanion displaces the chloride ion, forming the epoxide. Characterization of the involved stationary points is provided. Furthermore, by using three different models of the halide binding site, we are able to assess the adopted modeling methodology.

Entities:  

Year:  2008        PMID: 26636366     DOI: 10.1021/ct8000443

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  13 in total

Review 1.  Recent developments of the quantum chemical cluster approach for modeling enzyme reactions.

Authors:  Per E M Siegbahn; Fahmi Himo
Journal:  J Biol Inorg Chem       Date:  2009-05-13       Impact factor: 3.358

Review 2.  Enzymatic chemistry of cyclopropane, epoxide, and aziridine biosynthesis.

Authors:  Christopher J Thibodeaux; Wei-chen Chang; Hung-wen Liu
Journal:  Chem Rev       Date:  2011-10-21       Impact factor: 60.622

3.  Why is the molybdenum-substituted tungsten-dependent formaldehyde ferredoxin oxidoreductase not active? A quantum chemical study.

Authors:  Rong-Zhen Liao
Journal:  J Biol Inorg Chem       Date:  2012-11-25       Impact factor: 3.358

4.  Mechanism of tungsten-dependent acetylene hydratase from quantum chemical calculations.

Authors:  Rong-Zhen Liao; Jian-Guo Yu; Fahmi Himo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

5.  Novel dehalogenase mechanism for 2,3-dichloro-1-propanol utilization in Pseudomonas putida strain MC4.

Authors:  Muhammad Irfan Arif; Ghufrana Samin; Jan G E van Leeuwen; Jantien Oppentocht; Dick B Janssen
Journal:  Appl Environ Microbiol       Date:  2012-06-29       Impact factor: 4.792

6.  Reaction mechanism of cis-3-chloroacrylic acid dehalogenase: a theoretical study.

Authors:  Robin Sevastik; Christian P Whitman; Fahmi Himo
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

7.  Towards a barrier height benchmark set for biologically relevant systems.

Authors:  Jimmy C Kromann; Anders S Christensen; Qiang Cui; Jan H Jensen
Journal:  PeerJ       Date:  2016-05-03       Impact factor: 2.984

8.  Exploring the Dependence of QM/MM Calculations of Enzyme Catalysis on the Size of the QM Region.

Authors:  Garima Jindal; Arieh Warshel
Journal:  J Phys Chem B       Date:  2016-09-09       Impact factor: 2.991

Review 9.  Mechanisms of metal-dependent non-redox decarboxylases from quantum chemical calculations.

Authors:  Xiang Sheng; Fahmi Himo
Journal:  Comput Struct Biotechnol J       Date:  2021-05-26       Impact factor: 7.271

10.  Quantum chemistry as a tool in asymmetric biocatalysis: limonene epoxide hydrolase test case.

Authors:  Maria E S Lind; Fahmi Himo
Journal:  Angew Chem Int Ed Engl       Date:  2013-03-19       Impact factor: 15.336

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.