Literature DB >> 26636354

Determination of Protein Surface Hydration by Systematic Charge Mutations.

Menghui Jia1, Jin Yang2, Yangzhong Qin2, Dihao Wang2, Haifeng Pan1, Lijuan Wang2, Jianhua Xu1, Dongping Zhong2.   

Abstract

Protein surface hydration is critical to its structural stability, flexibility, dynamics, and function. Recent observations of surface solvation on picosecond time scales have evoked debate on the origin of such relatively slow motions, from hydration water or protein charged side chains, especially with molecular dynamics simulations. Here we used a unique nuclease with a single tryptophan as a local probe and systematically mutated three neighboring charged residues to differentiate the contributions from hydration water and charged side chains. By various mutations of one, two, and all three charged residues, we observed slight increases in the total tryptophan Stokes shifts with fewer neighboring charged residue(s) and found insensitivity of charged side chains to the relaxation patterns. The dynamics is correlated with hydration water relaxation with the slowest time in a dense charged environment and the fastest time at a hydrophobic site. On such picosecond time scales, the protein surface motion is restricted. The total Stokes shifts are dominantly from hydration water relaxation and the slow dynamics is from water-driven relaxation, coupled to local protein fluctuations.

Entities:  

Keywords:  collective water-network relaxation; hydration dynamics; insensitivity of charge side chain; site-directed mutation

Mesh:

Substances:

Year:  2015        PMID: 26636354     DOI: 10.1021/acs.jpclett.5b02530

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  9 in total

1.  Direct Observation of Nanosecond Water Exchange Dynamics at a Protein Metal Site.

Authors:  Monika Stachura; Saumen Chakraborty; Alexander Gottberg; Leela Ruckthong; Vincent L Pecoraro; Lars Hemmingsen
Journal:  J Am Chem Soc       Date:  2016-12-20       Impact factor: 15.419

2.  Ultrafast Dynamics of Water-Protein Coupled Motions around the Surface of Eye Crystallin.

Authors:  Patrick Houston; Nicolas Macro; Minhee Kang; Long Chen; Jin Yang; Lijuan Wang; Zhengrong Wu; Dongping Zhong
Journal:  J Am Chem Soc       Date:  2020-02-11       Impact factor: 15.419

3.  Entropy connects water structure and dynamics in protein hydration layer.

Authors:  Jayangika N Dahanayake; Katie R Mitchell-Koch
Journal:  Phys Chem Chem Phys       Date:  2018-05-30       Impact factor: 3.676

4.  Protein Solvent Shell Structure Provides Rapid Analysis of Hydration Dynamics.

Authors:  Jayangika N Dahanayake; Elaheh Shahryari; Kirsten M Roberts; Micah E Heikes; Chandana Kasireddy; Katie R Mitchell-Koch
Journal:  J Chem Inf Model       Date:  2019-03-22       Impact factor: 4.956

5.  Revealing the origin of multiphasic dynamic behaviors in cyanobacteriochrome.

Authors:  Dihao Wang; Xiankun Li; Sheng Zhang; Lijuan Wang; Xiaojing Yang; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-05       Impact factor: 11.205

6.  Infrared and Fluorescence Assessment of Protein Dynamics: From Folding to Function.

Authors:  Bei Ding; Mary Rose Hilaire; Feng Gai
Journal:  J Phys Chem B       Date:  2016-05-25       Impact factor: 2.991

7.  Effects of nonequilibrium fluctuations on ultrafast short-range electron transfer dynamics.

Authors:  Yangyi Lu; Mainak Kundu; Dongping Zhong
Journal:  Nat Commun       Date:  2020-06-04       Impact factor: 14.919

Review 8.  Ultrafast Fluorescence Spectroscopy via Upconversion and Its Applications in Biophysics.

Authors:  Simin Cao; Haoyang Li; Zenan Zhao; Sanjun Zhang; Jinquan Chen; Jianhua Xu; Jay R Knutson; Ludwig Brand
Journal:  Molecules       Date:  2021-01-03       Impact factor: 4.411

9.  The Structural and Dynamical Properties of the Hydration of SNase Based on a Molecular Dynamics Simulation.

Authors:  Hangxin Liu; Shuqing Xiang; Haomiao Zhu; Li Li
Journal:  Molecules       Date:  2021-09-05       Impact factor: 4.411

  9 in total

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