Literature DB >> 26636194

Modeling Induction Phenomena in Intermolecular Interactions with an Ab Initio Force Field.

François Dehez1, János G Ángyán1, Ignacio Soteras Gutiérrez1, F Javier Luque1, Klaus Schulten1, Christophe Chipot1.   

Abstract

One possible road toward the development of a polarizable potential energy function relies on the use of distributed polarizabilities derived from the induction energy mapped around the molecule. Whereas such polarizable models are expected to reproduce the signature induction energy with an appreciable accuracy, it is far from clear whether they will perform equally well in the context of intermolecular interactions. To address this issue, while pursuing the ultimate goal of a "plug-and-play"-like approach, polarizability models determined quantum mechanically and consisting of atomic isotropic dipole plus charge-flow polarizabilities were combined with the classical, nonpolarizable Charmm force field. Performance of the models was probed in the challenging test cases of cation-π binding and the association of a divalent calcium ion with water, where induction effects are envisioned to be considerable. Since brute force comparison of the binding energies estimated from the polarizable and the classical Charmm potential energy functions is not justified, the individual electrostatic and induction contributions of the force field were confronted to the corresponding terms of a symmetry-adapted perturbation theory (SAPT) expansion carried out with the 6-311++G(d,p) basis set. While the quantum-mechanical and the molecular-mechanical electrostatic and damped induction contributions agree reasonably well, overall reproduction of the binding energies is plagued by an underestimated repulsion that underlines the necessity of de novo parametrization of the classical 6-12 form of the van der Waals potential. Based on the SAPT expansion, new Lennard-Jones parameters were optimized, which, combined with the remainder of the polarizable force field, yield an improved reproduction of the target binding energies.

Entities:  

Year:  2007        PMID: 26636194     DOI: 10.1021/ct700156a

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  6 in total

Review 1.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

2.  Polarization effects in molecular mechanical force fields.

Authors:  Piotr Cieplak; François-Yves Dupradeau; Yong Duan; Junmei Wang
Journal:  J Phys Condens Matter       Date:  2009-07-24       Impact factor: 2.333

3.  Polarizable intermolecular potentials for water and benzene interacting with halide and metal ions.

Authors:  Fabien Archambault; Christophe Chipot; Ignacio Soteras; F Javier Luque; Klaus Schulten; François Dehez
Journal:  J Chem Theory Comput       Date:  2009-01-01       Impact factor: 6.006

4.  Development of polarizable models for molecular mechanical calculations I: parameterization of atomic polarizability.

Authors:  Junmei Wang; Piotr Cieplak; Jie Li; Tingjun Hou; Ray Luo; Yong Duan
Journal:  J Phys Chem B       Date:  2011-03-10       Impact factor: 2.991

5.  Effect of Site-Specific Intermolecular Lysine-Tryptophan Interactions on the Aggregation of Gramicidin-Based Peptides Leading to Pore Formation in Lipid Membranes.

Authors:  Alexander M Firsov; Irina D Pogozheva; Sergey I Kovalchuk; Elena A Kotova; Yuri N Antonenko
Journal:  J Membr Biol       Date:  2018-07-11       Impact factor: 1.843

6.  Recognition of methylated DNA through methyl-CpG binding domain proteins.

Authors:  Xueqing Zou; Wen Ma; Ilia A Solov'yov; Christophe Chipot; Klaus Schulten
Journal:  Nucleic Acids Res       Date:  2011-11-22       Impact factor: 16.971

  6 in total

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