Literature DB >> 26621233

Reaction Coordinates and the Transition-Vector Approximation to the IRC.

Willem-Jan van Zeist1, Anton H Koers1, Lando P Wolters1, F Matthias Bickelhaupt1.   

Abstract

The appearance of a reaction profile or potential energy surface (PES) associated with the reaction path (defined as the path of steepest descent from the saddle point) depends on the choice of reaction coordinate onto which the intrinsic reaction coordinate is projected. This provides one with the freedom, but also the problem, of choosing the optimal perspective (i.e., the optimal reaction coordinate) for revealing what is essential for understanding the reaction. Here, we address this issue by analyzing a number of different reaction coordinates for the same set of model reactions, namely, prototypical oxidative addition reactions of C-X bonds to palladium. We show how different choices affect the appearance of the PES, and we discuss which qualities make a particular reaction coordinate most suitable for comparing and analyzing the reactions. Furthermore, we show how the transition vector (i.e., the normal mode associated with a negative force constant that leads from the saddle point to the steepest descent paths) can serve as a useful and computationally much more efficient approximation (designated TV-IRC) for full IRC computations, in the decisive region around the transition state.

Entities:  

Year:  2008        PMID: 26621233     DOI: 10.1021/ct700214v

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  12 in total

1.  Driving and retarding forces in a chemical reaction.

Authors:  Peter Politzer; Jane S Murray; Diana Yepes; Pablo Jaque
Journal:  J Mol Model       Date:  2014-07-19       Impact factor: 1.810

2.  SN2 versus SN2' Competition.

Authors:  Thomas Hansen; Pascal Vermeeren; Lea de Jong; F Matthias Bickelhaupt; Trevor A Hamlin
Journal:  J Org Chem       Date:  2022-06-24       Impact factor: 4.198

3.  The activation strain model and molecular orbital theory.

Authors:  Lando P Wolters; F Matthias Bickelhaupt
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2015-05-18

Review 4.  Analyzing Reaction Rates with the Distortion/Interaction-Activation Strain Model.

Authors:  F Matthias Bickelhaupt; Kendall N Houk
Journal:  Angew Chem Int Ed Engl       Date:  2017-07-17       Impact factor: 15.336

5.  Factors Controlling the Diels-Alder Reactivity of Hetero-1,3-Butadienes.

Authors:  Song Yu; Hans M de Bruijn; Dennis Svatunek; Trevor A Hamlin; F Matthias Bickelhaupt
Journal:  ChemistryOpen       Date:  2018-11-26       Impact factor: 2.911

6.  Structural Distortion of Cycloalkynes Influences Cycloaddition Rates both by Strain and Interaction Energies.

Authors:  Trevor A Hamlin; Brian J Levandowski; Ayush K Narsaria; Kendall N Houk; F Matthias Bickelhaupt
Journal:  Chemistry       Date:  2019-03-27       Impact factor: 5.236

7.  PyFrag 2019-Automating the exploration and analysis of reaction mechanisms.

Authors:  Xiaobo Sun; Thomas M Soini; Jordi Poater; Trevor A Hamlin; F Matthias Bickelhaupt
Journal:  J Comput Chem       Date:  2019-06-04       Impact factor: 3.376

8.  Dual Activation of Aromatic Diels-Alder Reactions.

Authors:  Ayush K Narsaria; Trevor A Hamlin; Koop Lammertsma; F Matthias Bickelhaupt
Journal:  Chemistry       Date:  2019-07-08       Impact factor: 5.236

9.  Arylic C-X Bond Activation by Palladium Catalysts: Activation Strain Analyses of Reactivity Trends.

Authors:  Pascal Vermeeren; Xiaobo Sun; F Matthias Bickelhaupt
Journal:  Sci Rep       Date:  2018-07-16       Impact factor: 4.379

10.  Switch From Pauli-Lowering to LUMO-Lowering Catalysis in Brønsted Acid-Catalyzed Aza-Diels-Alder Reactions.

Authors:  Song Yu; F Matthias Bickelhaupt; Trevor A Hamlin
Journal:  ChemistryOpen       Date:  2021-08       Impact factor: 2.630

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