Literature DB >> 26620523

Seed Dormancy in Arabidopsis Is Controlled by Alternative Polyadenylation of DOG1.

Malgorzata Cyrek1, Halina Fedak1, Arkadiusz Ciesielski1, Yanwu Guo1, Aleksandra Sliwa1, Lien Brzezniak1, Katarzyna Krzyczmonik1, Zbigniew Pietras1, Szymon Kaczanowski1, Fuquan Liu1, Szymon Swiezewski2.   

Abstract

DOG1 (Delay of Germination 1) is a key regulator of seed dormancy in Arabidopsis (Arabidopsis thaliana) and other plants. Interestingly, the C terminus of DOG1 is either absent or not conserved in many plant species. Here, we show that in Arabidopsis, DOG1 transcript is subject to alternative polyadenylation. In line with this, mutants in RNA 3' processing complex display weakened seed dormancy in parallel with defects in DOG1 proximal polyadenylation site selection, suggesting that the short DOG1 transcript is functional. This is corroborated by the finding that the proximally polyadenylated short DOG1 mRNA is translated in vivo and complements the dog1 mutant. In summary, our findings indicate that the short DOG1 protein isoform produced from the proximally polyadenylated DOG1 mRNA is a key player in the establishment of seed dormancy in Arabidopsis and characterizes a set of mutants in RNA 3' processing complex required for production of proximally polyadenylated functional DOG1 transcript.
© 2016 American Society of Plant Biologists. All Rights Reserved.

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Year:  2015        PMID: 26620523      PMCID: PMC4734566          DOI: 10.1104/pp.15.01483

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  48 in total

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Review 2.  Alternative polyadenylation: new insights from global analyses.

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Review 3.  Genome-wide alternative polyadenylation in animals: insights from high-throughput technologies.

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4.  DELAY OF GERMINATION 1 mediates a conserved coat-dormancy mechanism for the temperature- and gibberellin-dependent control of seed germination.

Authors:  Kai Graeber; Ada Linkies; Tina Steinbrecher; Klaus Mummenhoff; Danuše Tarkowská; Veronika Turečková; Michael Ignatz; Katja Sperber; Antje Voegele; Hans de Jong; Terezie Urbanová; Miroslav Strnad; Gerhard Leubner-Metzger
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-11       Impact factor: 11.205

Review 5.  Mechanisms and consequences of alternative polyadenylation.

Authors:  Dafne Campigli Di Giammartino; Kensei Nishida; James L Manley
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

6.  A novel role for histone methyltransferase KYP/SUVH4 in the control of Arabidopsis primary seed dormancy.

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8.  The Arabidopsis mutant, fy-1, has an ABA-insensitive germination phenotype.

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9.  Genome-wide characterization of intergenic polyadenylation sites redefines gene spaces in Arabidopsis thaliana.

Authors:  Xiaohui Wu; Yong Zeng; Jinting Guan; Guoli Ji; Rongting Huang; Qingshun Q Li
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  27 in total

1.  Basic LEUCINE ZIPPER TRANSCRIPTION FACTOR67 Transactivates DELAY OF GERMINATION1 to Establish Primary Seed Dormancy in Arabidopsis.

Authors:  Fiona M Bryant; David Hughes; Keywan Hassani-Pak; Peter J Eastmond
Journal:  Plant Cell       Date:  2019-04-08       Impact factor: 11.277

2.  Transcriptome Analyses of FY Mutants Reveal Its Role in mRNA Alternative Polyadenylation.

Authors:  Zhibo Yu; Juncheng Lin; Qingshun Quinn Li
Journal:  Plant Cell       Date:  2019-08-19       Impact factor: 11.277

3.  Control of seed dormancy in Arabidopsis by a cis-acting noncoding antisense transcript.

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-15       Impact factor: 11.205

4.  The autonomous flowering-time pathway pleiotropically regulates seed germination in Arabidopsis thaliana.

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5.  Antisense transcription represses Arabidopsis seed dormancy QTL DOG1 to regulate drought tolerance.

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Journal:  EMBO Rep       Date:  2017-10-13       Impact factor: 8.807

Review 6.  Co-Transcriptional RNA Processing in Plants: Exploring from the Perspective of Polyadenylation.

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Journal:  Int J Mol Sci       Date:  2021-03-24       Impact factor: 5.923

7.  Light in the transcription landscape: chromatin, RNA polymerase II and splicing throughout Arabidopsis thaliana's life cycle.

Authors:  Rocío S Tognacca; M Guillermina Kubaczka; Lucas Servi; Florencia S Rodríguez; Micaela A Godoy Herz; Ezequiel Petrillo
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8.  DELAY OF GERMINATION1 (DOG1) regulates both seed dormancy and flowering time through microRNA pathways.

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9.  Normal, novel or none: versatile regulation from alternative splicing.

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Review 10.  Post-transcriptional regulation of seed dormancy and germination: Current understanding and future directions.

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Journal:  Plant Commun       Date:  2021-02-18
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