Literature DB >> 26614336

Modeling the Excited States of Biological Chromophores within Many-Body Green's Function Theory.

Yuchen Ma1, Michael Rohlfing1, Carla Molteni1.   

Abstract

First-principle many-body Green's function theory (MBGFT) has been successfully used to describe electronic excitations in many materials, from bulk crystals to nanoparticles. Here we assess its performance for the calculations of the excited states of biological chromophores. MBGFT is based on a set of Green's function equations, whose key ingredients are the electron's self-energy Σ, which is obtained by Hedin's GW approach, and the electron-hole interaction, which is described by the Bethe-Salpeter equation (BSE). The GW approach and the BSE predict orbital energies and excitation energies with high accuracy, respectively. We have calculated the low-lying excited states of a series of model biological chromophores, related to the photoactive yellow protein (PYP), rhodopsin, and the green fluorescent protein (GFP), obtaining a very good agreement with the available experimental and accurate theoretical data; the order of the excited states is also correctly predicted. MBGFT bridges the gap between time-dependent density functional theory and high-level quantum chemistry methods, combining the efficiency of the former with the accuracy of the latter: this makes MBGFT a promising method for studying excitations in complex biological systems.

Entities:  

Year:  2009        PMID: 26614336     DOI: 10.1021/ct900528h

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  9 in total

1.  Tuning the electronic and optical properties of NDT-based conjugated polymers by adopting fused heterocycles as acceptor units: a theoretical study.

Authors:  Na Cheng; Changqiao Zhang; Yongjun Liu
Journal:  J Mol Model       Date:  2017-07-14       Impact factor: 1.810

2.  Benchmarking the Performance of Time-Dependent Density Functional Theory Methods on Biochromophores.

Authors:  Yihan Shao; Ye Mei; Dage Sundholm; Ville R I Kaila
Journal:  J Chem Theory Comput       Date:  2019-12-26       Impact factor: 6.006

3.  Full-frequency dynamical Bethe-Salpeter equation without frequency and a study of double excitations.

Authors:  Sylvia J Bintrim; Timothy C Berkelbach
Journal:  J Chem Phys       Date:  2022-01-28       Impact factor: 3.488

4.  Benchmarking the Bethe-Salpeter Formalism on a Standard Organic Molecular Set.

Authors:  Denis Jacquemin; Ivan Duchemin; Xavier Blase
Journal:  J Chem Theory Comput       Date:  2015-07-14       Impact factor: 6.006

5.  A new energy transfer channel from carotenoids to chlorophylls in purple bacteria.

Authors:  Jin Feng; Chi-Wei Tseng; Tingwei Chen; Xia Leng; Huabing Yin; Yuan-Chung Cheng; Michael Rohlfing; Yuchen Ma
Journal:  Nat Commun       Date:  2017-07-10       Impact factor: 14.919

6.  Intermolecular Singlet and Triplet Exciton Transfer Integrals from Many-Body Green's Functions Theory.

Authors:  Jens Wehner; Björn Baumeier
Journal:  J Chem Theory Comput       Date:  2017-03-08       Impact factor: 6.006

7.  Electronic Excitations in Complex Molecular Environments: Many-Body Green's Functions Theory in VOTCA-XTP.

Authors:  Jens Wehner; Lothar Brombacher; Joshua Brown; Christoph Junghans; Onur Çaylak; Yuriy Khalak; Pranav Madhikar; Gianluca Tirimbò; Björn Baumeier
Journal:  J Chem Theory Comput       Date:  2018-11-21       Impact factor: 6.006

8.  Ab Initio Geometry and Bright Excitation of Carotenoids: Quantum Monte Carlo and Many Body Green's Function Theory Calculations on Peridinin.

Authors:  Emanuele Coccia; Daniele Varsano; Leonardo Guidoni
Journal:  J Chem Theory Comput       Date:  2014-01-14       Impact factor: 6.006

9.  0-0 Energies Using Hybrid Schemes: Benchmarks of TD-DFT, CIS(D), ADC(2), CC2, and BSE/GW formalisms for 80 Real-Life Compounds.

Authors:  Denis Jacquemin; Ivan Duchemin; Xavier Blase
Journal:  J Chem Theory Comput       Date:  2015-10-09       Impact factor: 6.006

  9 in total

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