Literature DB >> 26613476

Entropy, Ergodicity, and Stem Cell Multipotency.

Sonya J Ridden1, Hannah H Chang2, Konstantinos C Zygalakis1, Ben D MacArthur1,3.   

Abstract

Populations of mammalian stem cells commonly exhibit considerable cell-cell variability. However, the functional role of this diversity is unclear. Here, we analyze expression fluctuations of the stem cell surface marker Sca1 in mouse hematopoietic progenitor cells using a simple stochastic model and find that the observed dynamics naturally lie close to a critical state, thereby producing a diverse population that is able to respond rapidly to environmental changes. We propose an information-theoretic interpretation of these results that views cellular multipotency as an instance of maximum entropy statistical inference.

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Year:  2015        PMID: 26613476     DOI: 10.1103/PhysRevLett.115.208103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  12 in total

Review 1.  Criticality in cell differentiation.

Authors:  Indrani Bose; Mainak Pal
Journal:  J Biosci       Date:  2017-12       Impact factor: 1.826

Review 2.  Single cell proteomics in biomedicine: High-dimensional data acquisition, visualization, and analysis.

Authors:  Yapeng Su; Qihui Shi; Wei Wei
Journal:  Proteomics       Date:  2017-02       Impact factor: 3.984

3.  Modeling of cytometry data in logarithmic space: When is a bimodal distribution not bimodal?

Authors:  Amir Erez; Robert Vogel; Andrew Mugler; Andrew Belmonte; Grégoire Altan-Bonnet
Journal:  Cytometry A       Date:  2018-02-16       Impact factor: 4.355

4.  Rate of entropy model for irreversible processes in living systems.

Authors:  R Zivieri; N Pacini; G Finocchio; M Carpentieri
Journal:  Sci Rep       Date:  2017-08-22       Impact factor: 4.379

5.  Stem Cell Differentiation as a Non-Markov Stochastic Process.

Authors:  Patrick S Stumpf; Rosanna C G Smith; Michael Lenz; Andreas Schuppert; Franz-Josef Müller; Ann Babtie; Thalia E Chan; Michael P H Stumpf; Colin P Please; Sam D Howison; Fumio Arai; Ben D MacArthur
Journal:  Cell Syst       Date:  2017-09-27       Impact factor: 10.304

6.  A stochastic and dynamical view of pluripotency in mouse embryonic stem cells.

Authors:  Yen Ting Lin; Peter G Hufton; Esther J Lee; Davit A Potoyan
Journal:  PLoS Comput Biol       Date:  2018-02-16       Impact factor: 4.475

7.  Phenotypic heterogeneity and evolution of melanoma cells associated with targeted therapy resistance.

Authors:  Yapeng Su; Marcus Bintz; Yezi Yang; Lidia Robert; Alphonsus H C Ng; Victoria Liu; Antoni Ribas; James R Heath; Wei Wei
Journal:  PLoS Comput Biol       Date:  2019-06-05       Impact factor: 4.475

Review 8.  Tissue rheology in embryonic organization.

Authors:  Nicoletta I Petridou; Carl-Philipp Heisenberg
Journal:  EMBO J       Date:  2019-09-12       Impact factor: 11.598

9.  Haematopoietic stem cells: entropic landscapes of differentiation.

Authors:  K Wiesner; J Teles; M Hartnor; C Peterson
Journal:  Interface Focus       Date:  2018-10-19       Impact factor: 3.906

10.  De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.

Authors:  Dominic Grün; Mauro J Muraro; Jean-Charles Boisset; Kay Wiebrands; Anna Lyubimova; Gitanjali Dharmadhikari; Maaike van den Born; Johan van Es; Erik Jansen; Hans Clevers; Eelco J P de Koning; Alexander van Oudenaarden
Journal:  Cell Stem Cell       Date:  2016-06-23       Impact factor: 24.633

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