Literature DB >> 26609608

"Mindless" DFT Benchmarking.

Martin Korth1, Stefan Grimme1.   

Abstract

A diversity-oriented approach for the generation of thermochemical benchmark sets is presented. Test sets consisting of randomly generated "artificial molecules" (AMs) are proposed that rely on systematic constraints rather than uncontrolled chemical biases. In this way, the narrow structural space of chemical intuition is opened up and electronically difficult cases can be produced in an unforeseeable manner. For the calculation of chemically meaningful relative energies, AMs are systematically decomposed into small molecules (hydrides and diatomics). Two different example test sets containing eight-atom, single-reference, main group AMs with chemically very diverse and unusual structures are generated. Highly accurate all-electron, estimated CCSD(T)/complete basis set reference energies are also provided. They are used to benchmark the density functionals S-VWN, BP86, B-LYP, B97-D, PBE, TPSS, PBEh, BH-LYP, B3-PW91, B3-LYP, B2-PLYP, B2GP-PLYP, BMK, MPW1B95, M05, M05-2X, PW6B95, M06, M06-L, and M06-2X. In selected cases, an empirical dispersion correction (DFT-D) has been applied. Due to the composition of the sets, it is expected that a good performance indicates "robustness" in many different chemical applications. The results of a statistical analysis of the errors for the entire set with 165 entries (average reaction energy of 117 kcal/mol, dubbed as the MB08-165 set) perfectly fit to the "Jacob's ladder" metaphor for the ordering of density functionals according to their theoretical complexity. The mean absolute deviation (MAD) decreases very strongly from LDA (20 kcal/mol) to GGAs (MAD of about 10 kcal/mol) but then was less pronounced to hybrid-GGAs (MAD of about 6-8 kcal/mol). The best performance (MAD of 4.1-4.2 kcal/mol) is found for the (fifth-rung) double-hybrid functionals B2-PLYP-D and B2GP-PLYP-D, followed by the M06-2X meta-hybrid (MAD of 4.8 kcal/mol). The significance of the proposed approach for thermodynamic benchmarking is discussed and related to the observed performance ranking also regarding wave function based methods.

Entities:  

Year:  2009        PMID: 26609608     DOI: 10.1021/ct800511q

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  24 in total

1.  An assessment of DFT methods for predicting the thermochemistry of ion-molecule reactions of group 14 elements (Si, Ge, Sn).

Authors:  Igor S Ignatyev; Manuel Montejo; Juan Jesús López González
Journal:  J Mol Model       Date:  2013-11-08       Impact factor: 1.810

2.  Calculation of Heats of Formation for Zn Complexes: Comparison of Density Functional Theory, Second Order Perturbation Theory, Coupled-Cluster and Complete Active Space Methods.

Authors:  Michael N Weaver; Kenneth M Merz; Dongxia Ma; Hyun Jung Kim; Laura Gagliardi
Journal:  J Chem Theory Comput       Date:  2013-12-10       Impact factor: 6.006

Review 3.  Quantum mechanical investigations of organocatalysis: mechanisms, reactivities, and selectivities.

Authors:  Paul Ha-Yeon Cheong; Claude Y Legault; Joann M Um; Nihan Çelebi-Ölçüm; K N Houk
Journal:  Chem Rev       Date:  2011-06-28       Impact factor: 60.622

4.  Density functional theory studies of the extent of hole delocalization in one-electron oxidized adenine and guanine base stacks.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2011-03-21       Impact factor: 2.991

5.  The octet rule in chemical space: generating virtual molecules.

Authors:  Rafel Israels; Astrid Maaß; Jan Hamaekers
Journal:  Mol Divers       Date:  2017-08-03       Impact factor: 2.943

6.  The exocyclic amino group of adenine in PtII and PdII complexes: a critical comparison of the X-ray crystallographic structural data and gas phase calculations.

Authors:  Radu Silaghi-Dumitrescu; Béla Mihály; Timea Mihály; Amr A A Attia; Pablo J Sanz Miguel; Bernhard Lippert
Journal:  J Biol Inorg Chem       Date:  2017-03-17       Impact factor: 3.358

7.  Involvement of ferryl in the reaction between nitrite and the oxy forms of globins.

Authors:  Denisa Hathazi; Sonia Diana Mahuţ; Florina-Violeta Scurtu; Cristina Bischin; Corina Stanciu; Amr Ali Attia; Grigore Damian; Radu Silaghi-Dumitrescu
Journal:  J Biol Inorg Chem       Date:  2014-07-27       Impact factor: 3.358

8.  N-O bond cleavage mechanism(s) in nitrous oxide reductase.

Authors:  Mehmed Z Ertem; Christopher J Cramer; Fahmi Himo; Per E M Siegbahn
Journal:  J Biol Inorg Chem       Date:  2012-03-21       Impact factor: 3.358

9.  Assessment of the CCSD and CCSD(T) coupled-cluster methods in calculating heats of formation for Zn complexes.

Authors:  Michael N Weaver; Yue Yang; Kenneth M Merz
Journal:  J Phys Chem A       Date:  2009-09-17       Impact factor: 2.781

10.  Accurate reaction enthalpies and sources of error in DFT thermochemistry for aldol, Mannich, and alpha-aminoxylation reactions.

Authors:  Steven E Wheeler; Antonio Moran; Susan N Pieniazek; K N Houk
Journal:  J Phys Chem A       Date:  2009-09-24       Impact factor: 2.781

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