Literature DB >> 19711937

Accurate reaction enthalpies and sources of error in DFT thermochemistry for aldol, Mannich, and alpha-aminoxylation reactions.

Steven E Wheeler1, Antonio Moran, Susan N Pieniazek, K N Houk.   

Abstract

Enthalpies for bond-forming reactions that are subject to organocatalysis have been predicted using the high-accuracy CBS-QB3 model chemistry and six DFT functionals. Reaction enthalpies were decomposed into contributions from changes in bonding and other intramolecular effects via the hierarchy of homodesmotic reactions. The order of the reaction exothermicities (aldol < n class="Chemical">Mannich approximately alpha-aminoxylation) arises primarily from changes in formal bond types mediated by contributions from secondary intramolecular interactions. In each of these reaction types, methyl substitution at the beta- and gamma-positions stabilizes the products relative to the unsubstituted case. The performance of six DFT functionals (B3LYP, B3PW91, B1B95, MPW1PW91, PBE1PBE, and M06-2X), MP2, and SCS-MP2 has been assessed for the prediction of these reaction enthalpies. Even though the PBE1PBE and M06-2X functionals perform well for the aldol and Mannich reactions, errors roughly double when these functionals are applied to the alpha-aminoxylation reactions. B3PW91 and B1B95, which offer modest accuracy for the aldol and Mannich reactions, yield reliable predictions for the two alpha-aminoxylation reactions. The excellent performance of the M06-2X and PBE1PBE functionals for aldol and Mannich reactions stems from the cancellation of sizable errors arising from inadequate descriptions of the underlying bond transformations and intramolecular interactions. SCS-MP2/cc-pVTZ performs most consistently across these three classes of reactions, although the reaction exothermicities are systematically underestimated by 1-3 kcal mol(-1). Conventional MP2, when paired with the cc-pVTZ basis set, performs somewhat better than SCS-MP2 for some of these reactions, particularly the alpha-aminoxylations. Finally, the merits of benchmarking DFT functionals for the set of simple chemically meaningful transformations underlying all bond-forming reactions are discussed.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19711937      PMCID: PMC2748113          DOI: 10.1021/jp9058565

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  47 in total

1.  Generalized Gradient Approximation Made Simple.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

2.  The origin of stereoselectivity in proline-catalyzed intramolecular aldol reactions.

Authors:  S Bahmanyar; K N Houk
Journal:  J Am Chem Soc       Date:  2001-12-26       Impact factor: 15.419

3.  Enantioselective Organocatalysis.

Authors:  Peter I. Dalko; Lionel Moisan
Journal:  Angew Chem Int Ed Engl       Date:  2001-10-15       Impact factor: 15.336

4.  A cornucopia of cycloadducts: theoretical predictions of the mechanisms and products of the reactions of cyclopentadiene with cycloheptatriene.

Authors:  Andrew G Leach; E Goldstein; K N Houk
Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

5.  Atoms, molecules, solids, and surfaces: Applications of the generalized gradient approximation for exchange and correlation.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1992-09-15

6.  Enthalpies of formation from B3LYP calculations.

Authors:  Paul Winget; Timothy Clark
Journal:  J Comput Chem       Date:  2004-04-15       Impact factor: 3.376

7.  Transition states of amine-catalyzed aldol reactions involving enamine intermediates: theoretical studies of mechanism, reactivity, and stereoselectivity.

Authors:  S Bahmanyar; K N Houk
Journal:  J Am Chem Soc       Date:  2001-11-14       Impact factor: 15.419

8.  Quantum mechanical predictions of the stereoselectivities of proline-catalyzed asymmetric intermolecular aldol reactions.

Authors:  S Bahmanyar; K N Houk; Harry J Martin; Benjamin List
Journal:  J Am Chem Soc       Date:  2003-03-05       Impact factor: 15.419

9.  Novel small organic molecules for a highly enantioselective direct aldol reaction.

Authors:  Zhuo Tang; Fan Jiang; Luo-Ting Yu; Xin Cui; Liu-Zhu Gong; Ai-Qiao Mi; Yao-Zhong Jiang; Yun-Dong Wu
Journal:  J Am Chem Soc       Date:  2003-05-07       Impact factor: 15.419

10.  The direct catalytic asymmetric alpha-aminooxylation reaction: development of stereoselective routes to 1,2-diols and 1,2-amino alcohols and density functional calculations.

Authors:  Armando Córdova; Henrik Sundén; Anders Bøgevig; Mikael Johansson; Fahmi Himo
Journal:  Chemistry       Date:  2004-08-06       Impact factor: 5.236

View more
  9 in total

1.  DFT study of the dual catalytic role of L-proline in the aldol reaction and the effect of water on it.

Authors:  Yasaman Nobakht; Nematollah Arshadi
Journal:  J Mol Model       Date:  2018-11-06       Impact factor: 1.810

Review 2.  Quantum mechanical investigations of organocatalysis: mechanisms, reactivities, and selectivities.

Authors:  Paul Ha-Yeon Cheong; Claude Y Legault; Joann M Um; Nihan Çelebi-Ölçüm; K N Houk
Journal:  Chem Rev       Date:  2011-06-28       Impact factor: 60.622

3.  Stereoselectivities of histidine-catalyzed asymmetric aldol additions and contrasts with proline catalysis: a quantum mechanical analysis.

Authors:  Yu-hong Lam; K N Houk; Ulf Scheffler; Rainer Mahrwald
Journal:  J Am Chem Soc       Date:  2012-03-29       Impact factor: 15.419

4.  Unveiling the molecular mechanisms of the cycloaddition reactions of aryl hetaryl thioketones and C,N-disubstituted nitrilimines.

Authors:  George Baffour Pipim; Ernest Opoku
Journal:  J Mol Model       Date:  2021-02-16       Impact factor: 1.810

5.  Mechanistic elucidation of the tandem Diels-Alder/(3 + 2) cycloadditions in the design and syntheses of heterosteroids.

Authors:  Benedicta Donkor; Abdul Rashid Umar; Ernest Opoku
Journal:  J Mol Model       Date:  2022-02-27       Impact factor: 1.810

6.  Mechanistic and computational studies of exocyclic stereocontrol in the synthesis of bryostatin-like cis-2,6-disubstituted 4-alkylidenetetrahydropyrans by Prins cyclization.

Authors:  Yasuyuki Ogawa; Phillip P Painter; Dean J Tantillo; Paul A Wender
Journal:  J Org Chem       Date:  2012-11-07       Impact factor: 4.354

7.  Theoretical investigation of the ORR on boron-silicon nanotubes (B-SiNTs) as acceptable catalysts in fuel cells.

Authors:  Razieh Razavi; Meysam Najafi
Journal:  RSC Adv       Date:  2019-10-04       Impact factor: 4.036

8.  Kinetic evidence of an apparent negative activation enthalpy in an organocatalytic process.

Authors:  Xiao Han; Richmond Lee; Tao Chen; Jie Luo; Yixin Lu; Kuo-Wei Huang
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

9.  Kinetics versus thermodynamics in the proline catalyzed aldol reaction.

Authors:  M Orlandi; M Ceotto; M Benaglia
Journal:  Chem Sci       Date:  2016-05-06       Impact factor: 9.825

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.