| Literature DB >> 26608979 |
Liu Yang, Hong Zhang, Yan-Fang Jiang, Qing-Long Jin, Peng Zhang, Xu Li, Pu-Jun Gao, Jun-Qi Niu1.
Abstract
BACKGROUND: Primary biliary cirrhosis (PBC) is a chronic and slowly progressive cholestatic liver disease characterized by destruction of the interlobular bile ducts and a striking female predominance. The aim of this study was to identify associations between estrogen receptor (ESR) gene polymorphisms with the risk of developing PBC and abnormal serum liver tests in a Chinese population.Entities:
Mesh:
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Year: 2015 PMID: 26608979 PMCID: PMC4795257 DOI: 10.4103/0366-6999.168964
Source DB: PubMed Journal: Chin Med J (Engl) ISSN: 0366-6999 Impact factor: 2.628
Serum bilirubin, ALP, and GGT level of the 36 PBC subjects
| Parameter | ALP (U/L) | GGT (U/L) | TBIL (µmol/L) |
|---|---|---|---|
| Mean | 210.38 | 191.98 | 47.29 |
| SD | 166.99 | 230.32 | 94.25 |
| Median | 164.00 | 97.50 | 16.05 |
| Minimum | 41.00 | 13.00 | 5.40 |
| Maximum | 816.00 | 970.00 | 401.70 |
SD: Standard deviation; ALP: Alkaline phosphatase; GGT: Gamma-glutamyl transpeptidase; TBIL: Total bilirubin; PBC: Primary biliary cirrhosis.
PCR primers
| Site | Primer | Sequencing section |
|---|---|---|
| rs2234693 | AGGGTTATGTGGCAATGACGTA | CYGTTTTATGC |
| Bio-GGGAAACAGAGACAAAGCATAAA | ||
| TTCCAAATGTCCCAG | ||
| rs2228480 | AAAGTATTACATCACGGGGGAGG | CRGTCTG |
| Bio-AGGGATTATCTGAACCGTGTGG | ||
| GAGGGTTTCCCTGCCA | ||
| rs3798577 | TGGTGATGCATGATGAGGGTAAAT | ACYTGTGCAGGA |
| Bio-CTGCCCTACTTTCCCTCTTGTTCT | ||
| GCATGGAGCTGAACAGT | ||
| rs1256030 | CTGGCCACTCCTTTCATTACA | YCCCACCCCATGGC |
| Bio-TGTTTGAAAGTGGGTAGGTGAGTT | ||
| ATTACACTTAGAGATGTAGC | ||
| rs1048315 | AGCAGGGAACCTGTGTGG | AYTTTGGCAG |
| Bio-TGGCTCTTCAGGAAACTGACAT | ||
| GCAGGTGCCCCGGGT |
PCR: Polymerase chain reaction.
ESR gene polymorphism distributions and their associations with PBC
| SNP rs ID | Genotype/allelotype | PBC group ( | Control group ( | |||
|---|---|---|---|---|---|---|
| rs2234693 | CC | 5 (13.9) | 6 (17.1) | |||
| CT | 18 (50.0) | 13 (37.2) | ||||
| TT | 13 (36.1) | 16 (45.7) | 1.1938 | 0.5505 | ||
| C | 28 (38.9) | 25 (35.7) | ||||
| T | 44 (61.1) | 45 (64.3) | 0.1529 | 0.6958 | 1.1455 (0.5798–2.2628) | |
| rs2228480 | AA | 1 (2.8) | 2 (5.7) | |||
| AG | 15 (41.7) | 16 (45.7) | ||||
| GG | 20 (55.6) | 17 (48.6) | 0.5949 | 0.7427 | ||
| A | 17 (23.6) | 20 (28.6) | ||||
| G | 55 (76.4) | 50 (71.4) | 0.4533 | 0.5008 | 0.7727 (0.3645–1.6383) | |
| rs3798577 | CC | 9 (25.0) | 9 (25.7) | |||
| CT | 18 (50.0) | 17 (48.6) | ||||
| TT | 9 (25.0) | 8 (25.7) | 0.0047 | 0.9976 | ||
| C | 36 (50.0) | 35 (50.0) | ||||
| T | 36 (50.0) | 35 (50.0) | 0.0000 | 1.0000 | 1.0000 (0.5179–1.9309) | |
| rs1256030 | CC | 16 (44.4) | 23 (65.7) | |||
| CT | 15 (41.7) | 10 (28.6) | ||||
| TT | 5 (13.9) | 2 (5.7) | 3.5287 | 0.1714 | ||
| C | 47 (65.3) | 56 (80.0) | ||||
| T | 25 (34.7) | 14 (20.0) | 3.8616 | 0.0495 | 2.1277 (1.1872–4.5517) | |
| rs1048315 | CC | 5 (13.9) | 8 (22.9) | |||
| CT | 13 (36.1) | 17 (48.6) | ||||
| TT | 18 (50.0) | 10 (28.6) | 3.4980 | 0.1741 | ||
| C | 23 (31.9) | 33 (47.1) | ||||
| T | 49 (68.1) | 37 (52.9) | 3.4326 | 0.0640 | 0.5263 (0.2660–1.0413) |
SNP: Single-nucleotide polymorphisms; PBC: Primary biliary cirrhosis; OR: Odds ratio; CI: Confidence interval; ESR: Estrogen receptor.
Haplotype analysis of ESR1 SNPs
| Items | PBC group, | Control group, | 95% | |||
|---|---|---|---|---|---|---|
| CAC | 11.29 (15.7) | 6.68 (9.5) | 1.210 | 0.2714 | 1.763 | 0.636–4.887 |
| CGT | 12.91 (17.9) | 9.78 (14.0) | 0.414 | 0.5199 | 1.345 | 0.544–3.326 |
| TAC | 2.48 (3.4) | 13.32 (19.0) | 8.712 | 0.0032 | 0.152 | 0.038–0.616 |
| TGC | 18.43 (25.6) | 6.46 (9.2) | 6.582 | 0.0103 | 3.386 | 1.287–8.907 |
| TGT | 19.86 (27.6) | 25.22 (36.0) | 1.167 | 0.2800 | 0.676 | 0.332–1.377 |
OR: Odds ratio; CI: Confidence interval; SNP: Single-nucleotide polymorphisms; ESR1: Estrogen receptor 1; PBC: Primary biliary cirrhosis.
rs2234693 gene polymorphism distributions and their associations with ALP in PBC patients
| Groups | Genotype frequency, | Allele frequency, | ||||
|---|---|---|---|---|---|---|
| CC | CT | TT | C | T | ||
| Abnormal ALP group | 26 | 4 (15.4) | 17 (65.4) | 5 (19.2) | 25 (48.1) | 27 (51.9) |
| Normal ALP group | 10 | 1 (10.0) | 1 (10.0) | 8 (80.0) | 3 (15.0) | 17 (85.0) |
| 11.9673 | 6.6498 | |||||
| 0.0025 | 0.0099 | |||||
| 5.2469 (1.3704–20.0895) | ||||||
OR: Odds ratio; CI: Confidence interval; ALP: Alkaline phosphatase; PBC: Primary biliary cirrhosis.
Haplotype analysis of ESR1 SNPs with ALP in PBC patients
| Items | Abnormal ALP group, | Normal ALP group, | 95% | |||
|---|---|---|---|---|---|---|
| TAC | 1.46 (0.028) | 1.50 (0.075) | 0.807 | 0.3690 | 0.356 | 0.034–3.702 |
| TGC | 14.28 (0.275) | 3.50 (0.175) | 0.770 | 0.3802 | 1.784 | 0.484–6.574 |
| TGT | 11.26 (0.216) | 10.50 (0.525) | 6.518 | 0.0107 | 0.250 | 0.083–0.750 |
SNP: Single-nucleotide polymorphisms; ESR1: Estrogen receptor 1; ALP: Alkaline phosphatase; PBC: Primary biliary cirrhosis; OR: Odds ratio; CI: Confidence interval.
rs2234693 gene polymorphism distributions and their associations with GGT in PBC patients
| Groups | Genotype frequency, | Allele frequency, | ||||
|---|---|---|---|---|---|---|
| CC | CT | TT | C | T | ||
| Abnormal GGT group | 26 | 4 (15.4) | 16 (61.5) | 6 (23.1) | 24 (46.2) | 28 (53.8) |
| Normal GGT group | 10 | 1 (10.0) | 2 (20.0) | 7 (70.0) | 4 (20) | 16 (80) |
| 7.0466 | 4.1574 | |||||
| 0.0296 | 0.0415 | |||||
| 3.4286 (1.0083–13.6578) | ||||||
GGT: Gammaglutamyl transpeptidase; PBC: Primary biliary cirrhosis; OR: Odds ratio; CI: Confidence interval.
Haplotype analysis of ESR1 SNPs with GGT in PBC patients
| Items | Normal GGT group, | Abnormal GGT group, | 95% | |||
|---|---|---|---|---|---|---|
| CGT | 8.66 (16.7) | 3.00 (15.0) | 0.046 | 0.8300 | 1.169 | 0.280–4.880 |
| TAC | 2.93 (5.6) | 0.00 (0.0) | 0.529 | 0.4669 | 917.974 | 45.338–18,586.377 |
| TAT | 0.01 (0.0) | 2.00 (0.1) | 4.476 | 0.0344 | 0.002 | 0.000–0.039 |
| TGC | 12.08 (23.2) | 6.00 (30.0) | 0.284 | 0.5938 | 0.731 | 0.230–2.318 |
| TGT | 12.98 (25.0) | 8.00 (40.0) | 1.422 | 0.2331 | 0.517 | 0.173–1.543 |
SNP: Single-nucleotide polymorphisms; ESR1: Estrogen receptor 1; GGT: Gammaglutamyl transpeptidase; PBC: Primary biliary cirrhosis; OR: Odds ratio; CI: Confidence interval.
Haplotype analysis of ESR1 SNPs with TBIL in PBC patients
| Items | Significantly increased group, | Control group (TBIL <60 µmol/L), | 95% | |||
|---|---|---|---|---|---|---|
| CGC | 2.00 (12.5) | 3.45 (6.2) | 0.716 | 0.3976 | 2.177 | 0.346–13.697 |
| CGT | 3.00 (18.7) | 9.91 (17.7) | 0.009 | 0.9234 | 1.073 | 0.257–4.486 |
| TAC | 3.00 (18.7) | 1.76 (3.1) | 4.907 | 0.0268 | 7.109 | 1.004–50.308 |
| TGC | 2.00 (12.5) | 14.16 (25.3) | 1.169 | 0.2795 | 0.422 | 0.085–2.089 |
| TGT | 3.00 (18.7) | 17.48 (31.2) | 0.950 | 0.3296 | 0.508 | 0.128–2.015 |
SNP: Single-nucleotide polymorphisms; ESR1: Estrogen receptor 1; TBIL: Total bilirubin; PBC: Primary biliary cirrhosis; OR: Odds ratio; CI: Confidence interval.