Literature DB >> 26607359

Loktanella aquimaris sp. nov., Isolated from Seawater.

Kunho Kim1, Sathiyaraj Srinivasan2, Sang-Seob Lee3.   

Abstract

Two novel bacterial strains, designated C5(T) and C9 were isolated from a fish cage at Tongyeong, South Korea and were characterized to determine their taxonomic position. The strains were Gram-negative, non-motile, strictly aerobic and short rod shaped. Growth occurred between 20 and 32 °C (optimum 30 °C) and at pH 6.0-9.0 (optimum pH 8.0) and at 0-10 % NaCl (optimum at 2 % NaCl). Based on the 16S rRNA gene sequence analysis, they were identified as a member of the genus Loktanella that belongs to the phylum Proteobacteria. Strains C5(T) and C9 were analyzed by a polyphasic approach, revealing variations in their phenotypic characters but reciprocal DNA-DNA hybridization values confirmed that they belong to the same species. Phylogenetic analysis of the 16S rRNA gene sequences of closely related species indicated their similarities were below 97 %. The predominant isoprenoid quinone is ubiquinone-10 (Q-10). The major cellular fatty acids were C16:0, and C18:1 ω7c. Major polar lipid contained phosphatidylglycerol (PG), phosphatidycholine (PC), diphosphatidylglycerol (DPG), phosphatidylethanolamine (PE), unidentified amino lipid (AL) and unidentified lipids (L1-3). Based on phylogenetic and phenotypic data, the isolated strains represent a novel species of the genus Loktanella, for which the name Loktanella aquimaris sp. nov. is proposed. The type strains were C5(T) (=KEMB 3-892(T) = JCM 30382(T)), and a second strain is C9 (=KEMB 3-893 = JCM 30383).

Entities:  

Keywords:  Bacteria; Loktanella; Polyphasic; Taxonomy

Mesh:

Substances:

Year:  2015        PMID: 26607359     DOI: 10.1007/s00284-015-0945-0

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  9 in total

1.  Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.

Authors:  Ok-Sun Kim; Yong-Joon Cho; Kihyun Lee; Seok-Hwan Yoon; Mincheol Kim; Hyunsoo Na; Sang-Cheol Park; Yoon Seong Jeon; Jae-Hak Lee; Hana Yi; Sungho Won; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2011-11-25       Impact factor: 2.747

2.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

3.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

4.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

5.  Loktanella cinnabarina sp. nov., isolated from a deep subseafloor sediment, and emended description of the genus Loktanella.

Authors:  Taishi Tsubouchi; Yasuhiro Shimane; Kozue Mori; Masayuki Miyazaki; Akihiro Tame; Katsuyuki Uematsu; Tadashi Maruyama; Yuji Hatada
Journal:  Int J Syst Evol Microbiol       Date:  2012-07-27       Impact factor: 2.747

6.  Loktanella litorea sp. nov., isolated from seawater.

Authors:  Jung-Hoon Yoon; Yong-Taek Jung; Jung-Sook Lee
Journal:  Int J Syst Evol Microbiol       Date:  2012-03-02       Impact factor: 2.747

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  Loktanella atrilutea sp. nov., isolated from seawater in Japan.

Authors:  Shoichi Hosoya; Akira Yokota
Journal:  Int J Syst Evol Microbiol       Date:  2007-09       Impact factor: 2.747

9.  Loktanella salsilacus gen. nov., sp. nov., Loktanella fryxellensis sp. nov. and Loktanella vestfoldensis sp. nov., new members of the Rhodobacter group, isolated from microbial mats in Antarctic lakes.

Authors:  Stefanie Van Trappen; Joris Mergaert; Jean Swings
Journal:  Int J Syst Evol Microbiol       Date:  2004-07       Impact factor: 2.747

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.