Literature DB >> 22843714

Loktanella cinnabarina sp. nov., isolated from a deep subseafloor sediment, and emended description of the genus Loktanella.

Taishi Tsubouchi1, Yasuhiro Shimane1, Kozue Mori1, Masayuki Miyazaki1, Akihiro Tame2, Katsuyuki Uematsu2, Tadashi Maruyama1, Yuji Hatada1.   

Abstract

A Gram-stain-negative, aerobic, heterotrophic and salt-tolerant bacterium, designated strain LL-001(T), was isolated from a deep subseafloor sediment in Japanese waters. Cells were non-motile rods and colonies were smooth, convex, circular and vermilion. The conditions for growth were 15-35 °C, pH 5.5-7.5 and 1-8 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences confirmed that strain LL-001(T) belonged to the genus Loktanella within the family Rhodobacteraceae of the class Alphaproteobacteria. 16S rRNA gene sequence similarity between strain LL-001(T) and members of the genus Loktanella was 94.5-98.5 %; the highest sequence similarity was with Loktanella hongkongensis UST950701-009P(T). DNA-DNA relatedness between strain LL-001(T) and L. hongkongensis UST950701-009P(T) was 41.5-43.6 %. The DNA G+C content of strain LL-001(T) was 69.3 mol%. On the basis of biochemical features and 16S rRNA gene sequence comparison, strain LL-001(T) is considered to represent a novel species of the genus Loktanella, for which the name Loktanella cinnabarina sp. nov. is proposed. The type strain is LL-001(T) ( = JCM 18161(T) = CECT 8072(T)). The description of the genus Loktanella is also emended.

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Year:  2012        PMID: 22843714     DOI: 10.1099/ijs.0.043174-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  8 in total

1.  Loktanella aquimaris sp. nov., Isolated from Seawater.

Authors:  Kunho Kim; Sathiyaraj Srinivasan; Sang-Seob Lee
Journal:  Curr Microbiol       Date:  2015-11-25       Impact factor: 2.188

2.  Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support.

Authors:  Sean Gosselin; Matthew S Fullmer; Yutian Feng; Johann Peter Gogarten
Journal:  Syst Biol       Date:  2022-02-10       Impact factor: 15.683

3.  Loktanella spp. Gb03 as an algicidal bacterium, isolated from the culture of Dinoflagellate Gambierdiscus belizeanus.

Authors:  Anmar Hameed Bloh; Gires Usup; Asmat Ahmad
Journal:  Vet World       Date:  2016-02-12

4.  The Biogeographical Distribution of Benthic Roseobacter Group Members along a Pacific Transect Is Structured by Nutrient Availability within the Sediments and Primary Production in Different Oceanic Provinces.

Authors:  Marion Pohlner; Julius Degenhardt; Avril J E von Hoyningen-Huene; Bernd Wemheuer; Nora Erlmann; Bernhard Schnetger; Thomas H Badewien; Bert Engelen
Journal:  Front Microbiol       Date:  2017-12-18       Impact factor: 5.640

5.  Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009P(T)), a representative of the Roseobacter group.

Authors:  Stanley Ck Lau; Thomas Riedel; Anne Fiebig; James Han; Marcel Huntemann; Jörn Petersen; Natalia N Ivanova; Victor Markowitz; Tanja Woyke; Markus Göker; Nikos C Kyrpides; Hans-Peter Klenk; Pei-Yuan Qian
Journal:  Stand Genomic Sci       Date:  2015-08-11

6.  Draft Genome Sequence of Loktanella cinnabarina LL-001T, Isolated from Deep-Sea Floor Sediment.

Authors:  Shinro Nishi; Taishi Tsubouchi; Yoshihiro Takaki; Ryo Koyanagi; Nori Satoh; Tadashi Maruyama; Yuji Hatada
Journal:  Genome Announc       Date:  2013-11-14

7.  Draft Genome Sequence of Loktanella cinnabarina Strain XM1 Isolated from Coastal Surface Water.

Authors:  Ruijie Ma; Jianjun Wang; Qiong Wang; Zhaofeng Ma; Jia Li; Liqi Chen
Journal:  Genome Announc       Date:  2017-12-14

8.  Draft Genome Sequence of Loktanella maritima Strain YPC211, a Commensal Bacterium of the American Lobster (Homarus americanus).

Authors:  Hilary J Ranson; Jason LaPorte; Edward Spinard; Marta Gomez-Chiarri; David R Nelson; David C Rowley
Journal:  Genome Announc       Date:  2018-05-03
  8 in total

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