Literature DB >> 26607181

Broadening the phenotypic spectrum of pathogenic LARP7 variants: two cases with intellectual disability, variable growth retardation and distinct facial features.

Iris H I M Hollink1, Majid Alfadhel2, Anwar S Al-Wakeel2, Farough Ababneh2, Rolph Pfundt3, Stella A de Man1,4, Rami Abou Jamra5, Arndt Rolfs5,6, Aida M Bertoli-Avella5, Ingrid M B H van de Laar1.   

Abstract

In 2012 Alazami et al. described a novel syndromic cause of primordial dwarfism with distinct facial features and severe intellectual disability. A homozygous frameshift mutation in LARP7, a chaperone of the noncoding RNA 7SK, was discovered in patients from a single consanguineous Saudi family. To date, only one additional patient has recently been described. To further delineate the phenotype associated with LARP7 mutations, we report two additional cases originating from the Netherlands and Saudi Arabia. The patients presented with intellectual disability, distinct facial features and variable short stature. We describe their clinical features and compare them with the previously reported patients. Both cases were identified by diagnostic whole-exome sequencing, which detected two homozygous pathogenic LARP7 variants: c.1091_1094delCGGT in the Dutch case and c.1045_1051dupAAGGATA in the Saudi Arabian case. Both variants are leading to frameshifts with introduction of premature stop codons, suggesting that loss of function is likely the disease mechanism. This study is an independent confirmation of the syndrome due to LARP7 depletion. Our cases broaden the associated clinical features of the syndrome and contribute to the delineation of the phenotypic spectrum of LARP7 mutations.

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Year:  2015        PMID: 26607181     DOI: 10.1038/jhg.2015.134

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  10 in total

1.  Deep sequencing reveals 50 novel genes for recessive cognitive disorders.

Authors:  Hossein Najmabadi; Hao Hu; Masoud Garshasbi; Tomasz Zemojtel; Seyedeh Sedigheh Abedini; Wei Chen; Masoumeh Hosseini; Farkhondeh Behjati; Stefan Haas; Payman Jamali; Agnes Zecha; Marzieh Mohseni; Lucia Püttmann; Leyla Nouri Vahid; Corinna Jensen; Lia Abbasi Moheb; Melanie Bienek; Farzaneh Larti; Ines Mueller; Robert Weissmann; Hossein Darvish; Klaus Wrogemann; Valeh Hadavi; Bettina Lipkowitz; Sahar Esmaeeli-Nieh; Dagmar Wieczorek; Roxana Kariminejad; Saghar Ghasemi Firouzabadi; Monika Cohen; Zohreh Fattahi; Imma Rost; Faezeh Mojahedi; Christoph Hertzberg; Atefeh Dehghan; Anna Rajab; Mohammad Javad Soltani Banavandi; Julia Hoffer; Masoumeh Falah; Luciana Musante; Vera Kalscheuer; Reinhard Ullmann; Andreas Walter Kuss; Andreas Tzschach; Kimia Kahrizi; H Hilger Ropers
Journal:  Nature       Date:  2011-09-21       Impact factor: 49.962

2.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

3.  Compound heterozygous variants in the LARP7 gene as a cause of Alazami syndrome in a Caucasian female with significant failure to thrive, short stature, and developmental disability.

Authors:  Tina T Ling; Susanna Sorrentino
Journal:  Am J Med Genet A       Date:  2015-09-16       Impact factor: 2.802

4.  A post-hoc comparison of the utility of sanger sequencing and exome sequencing for the diagnosis of heterogeneous diseases.

Authors:  Kornelia Neveling; Ilse Feenstra; Christian Gilissen; Lies H Hoefsloot; Erik-Jan Kamsteeg; Arjen R Mensenkamp; Richard J T Rodenburg; Helger G Yntema; Liesbeth Spruijt; Sascha Vermeer; Tuula Rinne; Koen L van Gassen; Danielle Bodmer; Dorien Lugtenberg; Rick de Reuver; Wendy Buijsman; Ronny C Derks; Nienke Wieskamp; Bert van den Heuvel; Marjolijn J L Ligtenberg; Hannie Kremer; David A Koolen; Bart P C van de Warrenburg; Frans P M Cremers; Carlo L M Marcelis; Jan A M Smeitink; Saskia B Wortmann; Wendy A G van Zelst-Stams; Joris A Veltman; Han G Brunner; Hans Scheffer; Marcel R Nelen
Journal:  Hum Mutat       Date:  2013-10-18       Impact factor: 4.878

5.  Primordial dwarfism gene maintains Lin28 expression to safeguard embryonic stem cells from premature differentiation.

Authors:  Qian Dai; Guangxin Luan; Li Deng; Tingjun Lei; Han Kang; Xu Song; Yujun Zhang; Zhi-Xiong Xiao; Qintong Li
Journal:  Cell Rep       Date:  2014-04-24       Impact factor: 9.423

6.  Loss of function mutation in LARP7, chaperone of 7SK ncRNA, causes a syndrome of facial dysmorphism, intellectual disability, and primordial dwarfism.

Authors:  Anas M Alazami; Mohammad Al-Owain; Fatema Alzahrani; Taghreed Shuaib; Hussain Al-Shamrani; Yahya H Al-Falki; Saleh M Al-Qahtani; Tarfa Alsheddi; Dilek Colak; Fowzan S Alkuraya
Journal:  Hum Mutat       Date:  2012-08-30       Impact factor: 4.878

7.  Cell cycle gene-specific control of transcription has a critical role in proliferation of primordial germ cells.

Authors:  Daiji Okamura; Ikuma Maeda; Hirofumi Taniguchi; Yuko Tokitake; Makiko Ikeda; Keiko Ozato; Nathan Mise; Kuniya Abe; Toshiaki Noce; Juan Carlos Izpisua Belmonte; Yasuhisa Matsui
Journal:  Genes Dev       Date:  2012-11-15       Impact factor: 11.361

8.  Enhanced utility of family-centered diagnostic exome sequencing with inheritance model-based analysis: results from 500 unselected families with undiagnosed genetic conditions.

Authors:  Kelly D Farwell; Layla Shahmirzadi; Dima El-Khechen; Zöe Powis; Elizabeth C Chao; Brigette Tippin Davis; Ruth M Baxter; Wenqi Zeng; Cameron Mroske; Melissa C Parra; Stephanie K Gandomi; Ira Lu; Xiang Li; Hong Lu; Hsiao-Mei Lu; David Salvador; David Ruble; Monica Lao; Soren Fischbach; Jennifer Wen; Shela Lee; Aaron Elliott; Charles L M Dunlop; Sha Tang
Journal:  Genet Med       Date:  2014-11-13       Impact factor: 8.822

9.  Factors influencing success of clinical genome sequencing across a broad spectrum of disorders.

Authors:  Jenny C Taylor; Hilary C Martin; Stefano Lise; John Broxholme; Jean-Baptiste Cazier; Andy Rimmer; Alexander Kanapin; Gerton Lunter; Simon Fiddy; Chris Allan; A Radu Aricescu; Moustafa Attar; Christian Babbs; Jennifer Becq; David Beeson; Celeste Bento; Patricia Bignell; Edward Blair; Veronica J Buckle; Katherine Bull; Ondrej Cais; Holger Cario; Helen Chapel; Richard R Copley; Richard Cornall; Jude Craft; Karin Dahan; Emma E Davenport; Calliope Dendrou; Olivier Devuyst; Aimée L Fenwick; Jonathan Flint; Lars Fugger; Rodney D Gilbert; Anne Goriely; Angie Green; Ingo H Greger; Russell Grocock; Anja V Gruszczyk; Robert Hastings; Edouard Hatton; Doug Higgs; Adrian Hill; Chris Holmes; Malcolm Howard; Linda Hughes; Peter Humburg; David Johnson; Fredrik Karpe; Zoya Kingsbury; Usha Kini; Julian C Knight; Jonathan Krohn; Sarah Lamble; Craig Langman; Lorne Lonie; Joshua Luck; Davis McCarthy; Simon J McGowan; Mary Frances McMullin; Kerry A Miller; Lisa Murray; Andrea H Németh; M Andrew Nesbit; David Nutt; Elizabeth Ormondroyd; Annette Bang Oturai; Alistair Pagnamenta; Smita Y Patel; Melanie Percy; Nayia Petousi; Paolo Piazza; Sian E Piret; Guadalupe Polanco-Echeverry; Niko Popitsch; Fiona Powrie; Chris Pugh; Lynn Quek; Peter A Robbins; Kathryn Robson; Alexandra Russo; Natasha Sahgal; Pauline A van Schouwenburg; Anna Schuh; Earl Silverman; Alison Simmons; Per Soelberg Sørensen; Elizabeth Sweeney; John Taylor; Rajesh V Thakker; Ian Tomlinson; Amy Trebes; Stephen Rf Twigg; Holm H Uhlig; Paresh Vyas; Tim Vyse; Steven A Wall; Hugh Watkins; Michael P Whyte; Lorna Witty; Ben Wright; Chris Yau; David Buck; Sean Humphray; Peter J Ratcliffe; John I Bell; Andrew Om Wilkie; David Bentley; Peter Donnelly; Gilean McVean
Journal:  Nat Genet       Date:  2015-05-18       Impact factor: 38.330

10.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

  10 in total
  12 in total

Review 1.  Genetics of Short Stature.

Authors:  Youn Hee Jee; Anenisia C Andrade; Jeffrey Baron; Ola Nilsson
Journal:  Endocrinol Metab Clin North Am       Date:  2017-02-23       Impact factor: 4.741

2.  Structural basis for recognition of human 7SK long noncoding RNA by the La-related protein Larp7.

Authors:  Catherine D Eichhorn; Yuan Yang; Lucas Repeta; Juli Feigon
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

3.  Stabilize and connect: the role of LARP7 in nuclear non-coding RNA metabolism.

Authors:  Daniele Hasler; Gunter Meister; Utz Fischer
Journal:  RNA Biol       Date:  2020-06-03       Impact factor: 4.652

4.  Updating the neurodevelopmental profile of Alazami syndrome: Illustrating the role of developmental assessment in rare genetic disorders.

Authors:  Monica H Wojcik; Kate Linnea; Joan M Stoler; Leonard Rappaport
Journal:  Am J Med Genet A       Date:  2019-05-10       Impact factor: 2.802

5.  hLARP7 C-terminal domain contains an xRRM that binds the 3' hairpin of 7SK RNA.

Authors:  Catherine D Eichhorn; Rahul Chug; Juli Feigon
Journal:  Nucleic Acids Res       Date:  2016-09-26       Impact factor: 16.971

Review 6.  The La and related RNA-binding proteins (LARPs): structures, functions, and evolving perspectives.

Authors:  Richard J Maraia; Sandy Mattijssen; Isabel Cruz-Gallardo; Maria R Conte
Journal:  Wiley Interdiscip Rev RNA       Date:  2017-08-07       Impact factor: 9.957

7.  Potential oligogenic disease of mental retardation, short stature, spastic paraparesis, and osteopetrosis.

Authors:  Abdulaziz Alsemari; Mohanned Alsuhaibani; Rawabi Alhathlool; Bayan Mamdouh Ali
Journal:  Appl Clin Genet       Date:  2018-11-08

8.  AMPA-receptor specific biogenesis complexes control synaptic transmission and intellectual ability.

Authors:  Aline Brechet; Rebecca Buchert; Jochen Schwenk; Sami Boudkkazi; Gerd Zolles; Karine Siquier-Pernet; Irene Schaber; Wolfgang Bildl; Abdelkrim Saadi; Christine Bole-Feysot; Patrick Nitschke; Andre Reis; Heinrich Sticht; Nouriya Al-Sanna'a; Arndt Rolfs; Akos Kulik; Uwe Schulte; Laurence Colleaux; Rami Abou Jamra; Bernd Fakler
Journal:  Nat Commun       Date:  2017-07-04       Impact factor: 14.919

9.  Novel compound heterozygous variants in the LARP7 gene in a patient with Alazami syndrome.

Authors:  Sumito Dateki; Tasuku Kitajima; Toshiharu Kihara; Satoshi Watanabe; Koh-Ichiro Yoshiura; Hiroyuki Moriuchi
Journal:  Hum Genome Var       Date:  2018-03-29

10.  Compound Phenotype Due to Recessive Variants in LARP7 and OTOG Genes Disclosed by an Integrated Approach of SNP-Array and Whole Exome Sequencing.

Authors:  Pietro Palumbo; Orazio Palumbo; Maria Pia Leone; Ester di Muro; Stefano Castellana; Luigi Bisceglia; Tommaso Mazza; Massimo Carella; Marco Castori
Journal:  Genes (Basel)       Date:  2020-03-31       Impact factor: 4.096

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