Literature DB >> 26606220

Weak Molecular Interactions Studied with Parallel Implementations of the Local Pair Natural Orbital Coupled Pair and Coupled Cluster Methods.

Dimitrios G Liakos1, Andreas Hansen1, Frank Neese1.   

Abstract

A parallel implementation of the recently developed local pair natural orbital coupled electron pair approximation (LPNO-CEPA/n, n = Version 1, 2, or 3) and the corresponding LPNO coupled cluster method with single- and double excitations (LPNO-CCSD) is described. A detailed analysis alongside pseudocode is presented for the most important computational steps. The scaling with respect to the number of processors is reasonable and speedups of about 10 with 14 processors have been found in benchmark calculations (wall-clock time). The most important factor limiting the efficiency of the scaling with respect to the number of processors is probably the limited bandwidth of the presently prevailing multicore machines. The parallel LPNO methods were applied to study weak intermolecular interactions. Initially, the well-established S22 set of molecules was studied. The mean absolute error resulting from the use of the LPNO-CEPA/1 method relative to the most recent CCSD(T) reference data is found to be 0.24 kcal/mol. Thus, LPNO-CEPA/1 holds great promise for the efficient ab initio treatment of weak intermolecular interactions. In order to demonstrate the applicability of the methods to real systems, a two-dimensional potential energy surface for a trimer of 2,4-dihydroxy-3-acetyl-6-methyl acetophenone [C11H12O4] (81 atoms, 1296 basis functions, 133 single points) has been calculated with the LPNO-CEPA/1 method. In this system, a clear distinction can be made between hydrogen bonding and π-π interactions. The global minimum on the PES obtained from the calculations agrees excellently with the experimentally determined crystal structure. By contrast, popular density functional methods show no discernible minimum.

Entities:  

Year:  2010        PMID: 26606220     DOI: 10.1021/ct100445s

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  10 in total

1.  Correlated wavefunction methods in bioinorganic chemistry.

Authors:  Frank Neese; Dimitrios G Liakos; Shengfa Ye
Journal:  J Biol Inorg Chem       Date:  2011-05-05       Impact factor: 3.358

2.  Unveiling the Delicate Balance of Steric and Dispersion Interactions in Organocatalysis Using High-Level Computational Methods.

Authors:  Diana Yepes; Frank Neese; Benjamin List; Giovanni Bistoni
Journal:  J Am Chem Soc       Date:  2020-02-07       Impact factor: 15.419

3.  Balancing Donor-Acceptor and Dispersion Effects in Heavy Main Group Element π Interactions: Effect of Substituents on the Pnictogen⋅⋅⋅π Arene Interaction.

Authors:  Małgorzata Krasowska; Ana-Maria Fritzsche; Michael Mehring; Alexander A Auer
Journal:  Chemphyschem       Date:  2019-09-12       Impact factor: 3.102

4.  Open-Shell Variant of the London Dispersion-Corrected Hartree-Fock Method (HFLD) for the Quantification and Analysis of Noncovalent Interaction Energies.

Authors:  Ahmet Altun; Frank Neese; Giovanni Bistoni
Journal:  J Chem Theory Comput       Date:  2022-02-15       Impact factor: 6.006

5.  An induced-fit model for asymmetric organocatalytic reactions: a case study of the activation of olefins via chiral Brønsted acid catalysts.

Authors:  Ingolf Harden; Frank Neese; Giovanni Bistoni
Journal:  Chem Sci       Date:  2022-07-04       Impact factor: 9.969

6.  Gauging Radical Stabilization with Carbenes.

Authors:  Kevin Breitwieser; Hilke Bahmann; Robert Weiss; Dominik Munz
Journal:  Angew Chem Int Ed Engl       Date:  2022-08-04       Impact factor: 16.823

7.  Local energy decomposition analysis of hydrogen-bonded dimers within a domain-based pair natural orbital coupled cluster study.

Authors:  Ahmet Altun; Frank Neese; Giovanni Bistoni
Journal:  Beilstein J Org Chem       Date:  2018-04-25       Impact factor: 2.883

8.  Evaluation of dispersion type metal···π arene interaction in arylbismuth compounds - an experimental and theoretical study.

Authors:  Ana-Maria Preda; Małgorzata Krasowska; Lydia Wrobel; Philipp Kitschke; Phil C Andrews; Jonathan G MacLellan; Lutz Mertens; Marcus Korb; Tobias Rüffer; Heinrich Lang; Alexander A Auer; Michael Mehring
Journal:  Beilstein J Org Chem       Date:  2018-08-15       Impact factor: 2.883

9.  Local Energy Decomposition of Open-Shell Molecular Systems in the Domain-Based Local Pair Natural Orbital Coupled Cluster Framework.

Authors:  Ahmet Altun; Masaaki Saitow; Frank Neese; Giovanni Bistoni
Journal:  J Chem Theory Comput       Date:  2019-02-18       Impact factor: 6.006

10.  Theoretical Study of Light-Induced Crosslinking Reaction Between Pyrimidine DNA Bases and Aromatic Amino Acids.

Authors:  Attila Bende; Alex-Adrian Farcaş; Valer Toşa
Journal:  Front Bioeng Biotechnol       Date:  2022-01-17
  10 in total

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