Literature DB >> 26602761

RAG Off-Target Activity Is in the Loop.

Lili Blumenberg1, Jane A Skok2.   

Abstract

The 'off-target' activity of RAG recombinases contributes to mutations and cancer. Recent studies show that the influence of DNA regulatory elements is largely constrained by the formation of chromatin loops and interaction frequencies. Now, the Alt lab has identified major RAG off-target activity bearing similar limitations, with joining events restricted to convergent paired RSS elements in loop domains.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26602761      PMCID: PMC4679453          DOI: 10.1016/j.molmed.2015.10.007

Source DB:  PubMed          Journal:  Trends Mol Med        ISSN: 1471-4914            Impact factor:   11.951


  10 in total

1.  ATM stabilizes DNA double-strand-break complexes during V(D)J recombination.

Authors:  Andrea L Bredemeyer; Girdhar G Sharma; Ching-Yu Huang; Beth A Helmink; Laura M Walker; Katrina C Khor; Beth Nuskey; Kathleen E Sullivan; Tej K Pandita; Craig H Bassing; Barry P Sleckman
Journal:  Nature       Date:  2006-06-14       Impact factor: 49.962

2.  CTCF-binding elements 1 and 2 in the Igh intergenic control region cooperatively regulate V(D)J recombination.

Authors:  Sherry G Lin; Chunguang Guo; Arthur Su; Yu Zhang; Frederick W Alt
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

3.  Preferential utilization of the most JH-proximal VH gene segments in pre-B-cell lines.

Authors:  G D Yancopoulos; S V Desiderio; M Paskind; J F Kearney; D Baltimore; F W Alt
Journal:  Nature       Date:  1984 Oct 25-31       Impact factor: 49.962

Review 4.  Breaking TADs: insights into hierarchical genome organization.

Authors:  Pedro P Rocha; Ramya Raviram; Richard Bonneau; Jane A Skok
Journal:  Epigenomics       Date:  2015       Impact factor: 4.778

5.  Spatial partitioning of the regulatory landscape of the X-inactivation centre.

Authors:  Elphège P Nora; Bryan R Lajoie; Edda G Schulz; Luca Giorgetti; Ikuhiro Okamoto; Nicolas Servant; Tristan Piolot; Nynke L van Berkum; Johannes Meisig; John Sedat; Joost Gribnau; Emmanuel Barillot; Nils Blüthgen; Job Dekker; Edith Heard
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

6.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

7.  Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells.

Authors:  Roberto Chiarle; Yu Zhang; Richard L Frock; Susanna M Lewis; Benoit Molinie; Yu-Jui Ho; Darienne R Myers; Vivian W Choi; Mara Compagno; Daniel J Malkin; Donna Neuberg; Stefano Monti; Cosmas C Giallourakis; Monica Gostissa; Frederick W Alt
Journal:  Cell       Date:  2011-09-30       Impact factor: 41.582

8.  Three-dimensional folding and functional organization principles of the Drosophila genome.

Authors:  Tom Sexton; Eitan Yaffe; Ephraim Kenigsberg; Frédéric Bantignies; Benjamin Leblanc; Michael Hoichman; Hugues Parrinello; Amos Tanay; Giacomo Cavalli
Journal:  Cell       Date:  2012-01-19       Impact factor: 41.582

9.  Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Authors:  Jesse R Dixon; Siddarth Selvaraj; Feng Yue; Audrey Kim; Yan Li; Yin Shen; Ming Hu; Jun S Liu; Bing Ren
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

10.  CTCF-binding elements mediate control of V(D)J recombination.

Authors:  Chunguang Guo; Hye Suk Yoon; Andrew Franklin; Suvi Jain; Anja Ebert; Hwei-Ling Cheng; Erica Hansen; Orion Despo; Claudia Bossen; Christian Vettermann; Jamie G Bates; Nicholas Richards; Darienne Myers; Harin Patel; Michael Gallagher; Mark S Schlissel; Cornelis Murre; Meinrad Busslinger; Cosmas C Giallourakis; Frederick W Alt
Journal:  Nature       Date:  2011-09-11       Impact factor: 49.962

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.