Literature DB >> 26601007

SPIM-fluid: open source light-sheet based platform for high-throughput imaging.

Emilio J Gualda1, Hugo Pereira2, Tiago Vale1, Marta Falcão Estrada3, Catarina Brito3, Nuno Moreno1.   

Abstract

Light sheet fluorescence microscopy has recently emerged as the technique of choice for obtaining high quality 3D images of whole organisms/embryos with low photodamage and fast acquisition rates. Here we present an open source unified implementation based on Arduino and Micromanager, which is capable of operating Light Sheet Microscopes for automatized 3D high-throughput imaging on three-dimensional cell cultures and model organisms like zebrafish, oriented to massive drug screening.

Entities:  

Keywords:  (110.6880) Three-dimensional image acquisition; (180.2520) Fluorescence microscopy

Year:  2015        PMID： 26601007      PMCID： PMC4646551          DOI： 10.1364/BOE.6.004447

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN： 2156-7085            Impact factor:   3.732


  22 in total

1.  Optical sectioning deep inside live embryos by selective plane illumination microscopy.

Authors:  Jan Huisken; Jim Swoger; Filippo Del Bene; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2004-08-13       Impact factor: 47.728

2.  High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy.

Authors:  Peter J Verveer; Jim Swoger; Francesco Pampaloni; Klaus Greger; Marco Marcello; Ernst H K Stelzer
Journal:  Nat Methods       Date:  2007-03-04       Impact factor: 28.547

3.  OpenSpinMicroscopy: an open-source integrated microscopy platform.

Authors:  Emilio J Gualda; Tiago Vale; Pedro Almada; José A Feijó; Gabriel G Martins; Nuno Moreno
Journal:  Nat Methods       Date:  2013-06-09       Impact factor: 28.547

4.  Review Article: Recent advancements in optofluidic flow cytometer.

Authors:  Sung Hwan Cho; Jessica M Godin; Chun-Hao Chen; Wen Qiao; Hosuk Lee; Yu-Hwa Lo
Journal:  Biomicrofluidics       Date:  2010-12-30       Impact factor: 2.800

5.  Guide to light-sheet microscopy for adventurous biologists.

Authors:  Emmanuel G Reynaud; Jan Peychl; Jan Huisken; Pavel Tomancak
Journal:  Nat Methods       Date:  2015-01       Impact factor: 28.547

6.  Whole-brain functional imaging at cellular resolution using light-sheet microscopy.

Authors:  Misha B Ahrens; Michael B Orger; Drew N Robson; Jennifer M Li; Philipp J Keller
Journal:  Nat Methods       Date:  2013-03-18       Impact factor: 28.547

7.  Leukemic cell xenograft in zebrafish embryo for investigating drug efficacy.

Authors:  Benoist Pruvot; Arnaud Jacquel; Nathalie Droin; Patrick Auberger; Didier Bouscary; Jérome Tamburini; Marc Muller; Michaela Fontenay; Johanna Chluba; Eric Solary
Journal:  Haematologica       Date:  2011-01-12       Impact factor: 9.941

Review 8.  Advances in zebrafish chemical screening technologies.

Authors:  Jonathan R Mathias; Meera T Saxena; Jeff S Mumm
Journal:  Future Med Chem       Date:  2012-09       Impact factor: 3.808

9.  HepaRG microencapsulated spheroids in DMSO-free culture: novel culturing approaches for enhanced xenobiotic and biosynthetic metabolism.

Authors:  Sofia P Rebelo; Rita Costa; Marta Estrada; Valery Shevchenko; Catarina Brito; Paula M Alves
Journal:  Arch Toxicol       Date:  2014-08-09       Impact factor: 5.153

10.  Imaging of human differentiated 3D neural aggregates using light sheet fluorescence microscopy.

Authors:  Emilio J Gualda; Daniel Simão; Catarina Pinto; Paula M Alves; Catarina Brito
Journal:  Front Cell Neurosci       Date:  2014-08-06       Impact factor: 5.505
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  22 in total

1.  Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution.

Authors:  Leighton H Duncan; Mark W Moyle; Lin Shao; Titas Sengupta; Richard Ikegami; Abhishek Kumar; Min Guo; Ryan Christensen; Anthony Santella; Zhirong Bao; Hari Shroff; William Mohler; Daniel A Colón-Ramos
Journal:  J Vis Exp       Date:  2019-06-06       Impact factor: 1.355

2.  sideSPIM - selective plane illumination based on a conventional inverted microscope.

Authors:  Per Niklas Hedde; Leonel Malacrida; Siavash Ahrar; Albert Siryaporn; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2017-08-01       Impact factor: 3.732

3.  Super-resolution optofluidic scanning microscopy.

Authors:  Biagio Mandracchia; Jeonghwan Son; Shu Jia
Journal:  Lab Chip       Date:  2021-02-09       Impact factor: 6.799

4.  Optimized U-Net model for 3D light-sheet image segmentation of zebrafish trunk vessels.

Authors:  Jingyi Yin; Guang Yang; Xiaofei Qin; Hui Li; Linbo Wang
Journal:  Biomed Opt Express       Date:  2022-04-21       Impact factor: 3.562

Review 5.  Detection of Rare Objects by Flow Cytometry: Imaging, Cell Sorting, and Deep Learning Approaches.

Authors:  Denis V Voronin; Anastasiia A Kozlova; Roman A Verkhovskii; Alexey V Ermakov; Mikhail A Makarkin; Olga A Inozemtseva; Daniil N Bratashov
Journal:  Int J Mol Sci       Date:  2020-03-27       Impact factor: 5.923

6.  Using Light Sheet Fluorescence Microscopy to Image Zebrafish Eye Development.

Authors:  Jaroslav Icha; Christopher Schmied; Jaydeep Sidhaye; Pavel Tomancak; Stephan Preibisch; Caren Norden
Journal:  J Vis Exp       Date:  2016-04-10       Impact factor: 1.355

7.  Imaging tissue-mimic with light sheet microscopy: A comparative guideline.

Authors:  Jordi Andilla; Raphael Jorand; Omar E Olarte; Alexandre C Dufour; Martine Cazales; Yoann L E Montagner; Romain Ceolato; Nicolas Riviere; Jean-Christophe Olivo-Marin; Pablo Loza-Alvarez; Corinne Lorenzo
Journal:  Sci Rep       Date:  2017-03-21       Impact factor: 4.379

8.  MEMS enabled miniaturized light-sheet microscopy with all optical control.

Authors:  Spyridon Bakas; Deepak Uttamchandani; Hiroshi Toshiyoshi; Ralf Bauer
Journal:  Sci Rep       Date:  2021-07-08       Impact factor: 4.379

9.  Light-sheet microscopy imaging of a whole cleared rat brain with Thy1-GFP transgene.

Authors:  Marzena Stefaniuk; Emilio J Gualda; Monika Pawlowska; Diana Legutko; Paweł Matryba; Paulina Koza; Witold Konopka; Dorota Owczarek; Marcin Wawrzyniak; Pablo Loza-Alvarez; Leszek Kaczmarek
Journal:  Sci Rep       Date:  2016-06-17       Impact factor: 4.379

10.  Time-lapse 3-D measurements of a glucose biosensor in multicellular spheroids by light sheet fluorescence microscopy in commercial 96-well plates.

Authors:  Vincent Maioli; George Chennell; Hugh Sparks; Tobia Lana; Sunil Kumar; David Carling; Alessandro Sardini; Chris Dunsby
Journal:  Sci Rep       Date:  2016-11-25       Impact factor: 4.996
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