Literature DB >> 26599292

Posttranscriptional methylation of transfer and ribosomal RNA in stress response pathways, cell differentiation, and cancer.

Martyna C Popis1, Sandra Blanco1, Michaela Frye1.   

Abstract

PURPOSE OF REVIEW: Significant advances have been made in understanding the functional roles of evolutionarily conserved chemical modifications in RNA. By focusing on cytosine-5 methylation, we will highlight the latest insight into the mechanisms how posttranscriptional methylation contributes to cell fate decisions, with implications for cancer development. RECENT
FINDINGS: Several mutations in RNA-modifying enzymes have been identified to cause complex human diseases, and linked posttranscriptional modifications to fundamental cellular processes. Distinct posttranscriptional modifications are implicated in the regulation of stem cell maintenance and cellular differentiation. The dynamic deposition of a methyl mark into noncoding RNAs modulates the adaptive cellular responses to stress and alterations of methylation levels may lead to cancer.
SUMMARY: Posttranscriptional modifications such as cytosine-5 methylation are dynamically regulated and may influence tumour development, maintenance, and progression.

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Year:  2016        PMID: 26599292      PMCID: PMC4805175          DOI: 10.1097/CCO.0000000000000252

Source DB:  PubMed          Journal:  Curr Opin Oncol        ISSN: 1040-8746            Impact factor:   3.645


  95 in total

Review 1.  Transfer RNA methytransferases and their corresponding modifications in budding yeast and humans: activities, predications, and potential roles in human health.

Authors:  William L Towns; Thomas J Begley
Journal:  DNA Cell Biol       Date:  2011-12-22       Impact factor: 3.311

2.  rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

Authors:  Karen Jack; Cristian Bellodi; Dori M Landry; Rachel O Niederer; Arturas Meskauskas; Sharmishtha Musalgaonkar; Noam Kopmar; Olya Krasnykh; Alison M Dean; Sunnie R Thompson; Davide Ruggero; Jonathan D Dinman
Journal:  Mol Cell       Date:  2011-11-18       Impact factor: 17.970

3.  Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1.

Authors:  Irina Chernyakov; Joseph M Whipple; Lakmal Kotelawala; Elizabeth J Grayhack; Eric M Phizicky
Journal:  Genes Dev       Date:  2008-04-28       Impact factor: 11.361

4.  Azacytidine inhibits RNA methylation at DNMT2 target sites in human cancer cell lines.

Authors:  Matthias Schaefer; Sabine Hagemann; Katharina Hanna; Frank Lyko
Journal:  Cancer Res       Date:  2009-10-06       Impact factor: 12.701

5.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

6.  The tRNA methyltransferase Dnmt2 is required for accurate polypeptide synthesis during haematopoiesis.

Authors:  Francesca Tuorto; Friederike Herbst; Nader Alerasool; Sebastian Bender; Oliver Popp; Giuseppina Federico; Sonja Reitter; Reinhard Liebers; Georg Stoecklin; Hermann-Josef Gröne; Gunnar Dittmar; Hanno Glimm; Frank Lyko
Journal:  EMBO J       Date:  2015-08-13       Impact factor: 11.598

7.  Small RNAs derived from the 5' end of tRNA can inhibit protein translation in human cells.

Authors:  Andrew Sobala; Gyorgy Hutvagner
Journal:  RNA Biol       Date:  2013-04-01       Impact factor: 4.652

8.  A cluster of methylations in the domain IV of 25S rRNA is required for ribosome stability.

Authors:  Andriana Gigova; Sujitha Duggimpudi; Tim Pollex; Matthias Schaefer; Martin Koš
Journal:  RNA       Date:  2014-08-14       Impact factor: 4.942

9.  COSMIC: exploring the world's knowledge of somatic mutations in human cancer.

Authors:  Simon A Forbes; David Beare; Prasad Gunasekaran; Kenric Leung; Nidhi Bindal; Harry Boutselakis; Minjie Ding; Sally Bamford; Charlotte Cole; Sari Ward; Chai Yin Kok; Mingming Jia; Tisham De; Jon W Teague; Michael R Stratton; Ultan McDermott; Peter J Campbell
Journal:  Nucleic Acids Res       Date:  2014-10-29       Impact factor: 16.971

10.  Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.

Authors:  Dan Dominissini; Sharon Moshitch-Moshkovitz; Schraga Schwartz; Mali Salmon-Divon; Lior Ungar; Sivan Osenberg; Karen Cesarkas; Jasmine Jacob-Hirsch; Ninette Amariglio; Martin Kupiec; Rotem Sorek; Gideon Rechavi
Journal:  Nature       Date:  2012-04-29       Impact factor: 49.962

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  30 in total

1.  The Effects of Ultraviolet Radiation on Nucleoside Modifications in RNA.

Authors:  Congliang Sun; Manasses Jora; Beulah Solivio; Patrick A Limbach; Balasubrahmanyam Addepalli
Journal:  ACS Chem Biol       Date:  2018-02-05       Impact factor: 5.100

Review 2.  Finding the genetic mechanisms of folate deficiency and neural tube defects-Leaving no stone unturned.

Authors:  Kit Sing Au; Tina O Findley; Hope Northrup
Journal:  Am J Med Genet A       Date:  2017-09-25       Impact factor: 2.802

3.  TRMT1-Catalyzed tRNA Modifications Are Required for Redox Homeostasis To Ensure Proper Cellular Proliferation and Oxidative Stress Survival.

Authors:  Joshua M Dewe; Benjamin L Fuller; Jenna M Lentini; Stefanie M Kellner; Dragony Fu
Journal:  Mol Cell Biol       Date:  2017-10-13       Impact factor: 4.272

4.  Transcriptional Regulator AcrR Increases Ethanol Tolerance through Regulation of Fatty Acid Synthesis in Lactobacillus plantarum.

Authors:  Xiaopan Yang; Kunling Teng; Lili Li; Rina Su; Jie Zhang; Guomin Ai; Jin Zhong
Journal:  Appl Environ Microbiol       Date:  2019-10-30       Impact factor: 4.792

Review 5.  Mutations in RNA methylating enzymes in disease.

Authors:  Vanja Stojković; Danica Galonić Fujimori
Journal:  Curr Opin Chem Biol       Date:  2017-10-20       Impact factor: 8.822

Review 6.  RNA modifications regulating cell fate in cancer.

Authors:  Sylvain Delaunay; Michaela Frye
Journal:  Nat Cell Biol       Date:  2019-05-02       Impact factor: 28.824

Review 7.  RNA 5-methylcytosine modification and its emerging role as an epitranscriptomic mark.

Authors:  Yaqi Gao; Jingyuan Fang
Journal:  RNA Biol       Date:  2021-07-21       Impact factor: 4.766

8.  Transfer RNA methyltransferase gene NSUN2 mRNA expression modifies the effect of T cell activation score on patient survival in head and neck squamous carcinoma.

Authors:  Lingeng Lu; Stephen G Gaffney; Vincent L Cannataro; Jeffrey Townsend
Journal:  Oral Oncol       Date:  2019-12-27       Impact factor: 5.337

Review 9.  Translational control of stem cell function.

Authors:  James A Saba; Kifayathullah Liakath-Ali; Rachel Green; Fiona M Watt
Journal:  Nat Rev Mol Cell Biol       Date:  2021-07-16       Impact factor: 94.444

Review 10.  Long Non-Coding RNA Epigenetics.

Authors:  Marek Kazimierczyk; Jan Wrzesinski
Journal:  Int J Mol Sci       Date:  2021-06-07       Impact factor: 5.923

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