Literature DB >> 26598257

Assessment of Popular DFT and Semiempirical Molecular Orbital Techniques for Calculating Relative Transition State Energies and Kinetic Product Distributions in Enantioselective Organocatalytic Reactions.

Sebastian Schenker1,2, Christopher Schneider2, Svetlana B Tsogoeva2, Timothy Clark1,3.   

Abstract

The performance of computationally accessible levels of calculation for the transition states of organocatalytic reaction has been assessed. Reference post-Hartree-Fock single point energy calculations were used as standards for the gas-phase Born-Oppenheimer relative energies of pairs of alternative transition states that lead to the two product enantiomers. We show that semiempirical methods cannot even be relied on to yield qualitatively correct results. The geometries (optimized, for instance, with DFT) have a large impact on the results of high-level post-HF calculations, so that it is essential to use an adequate DFT technique and basis set. DFT can yield quantitatively correct results that are consistent with post-HF calculations if functionals that consider dispersion are used. Geometries for large systems show larger errors than those for smaller ones but are treated better by functionals such as M06-2X and w97Bxd that include dispersion implicitly or explicitly. Local correlation techniques introduce errors of comparable magnitude to those given by different levels of geometry optimization. We recommend RICC2/TZVP//M06-2X/TZVP, RI-MP2/TZVP// M06-2X/TZVP, and M06-2X/TZVP// M06-2X/TZVP calculations in that order, depending on the size of the system.

Entities:  

Year:  2011        PMID: 26598257     DOI: 10.1021/ct2002013

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  10 in total

1.  A Computational Study of the Origin of Stereoinduction in NHC-Catalyzed Annulation Reactions of α,β-Unsaturated Acyl Azoliums.

Authors:  Eirik Lyngvi; Jeffrey W Bode; Franziska Schoenebeck
Journal:  Chem Sci       Date:  2012-03-01       Impact factor: 9.825

2.  On the Mechanism of the Asymmetric Aldol Addition of Chiral N-Amino Cyclic Carbamate Hydrazones: Evidence of Non-Curtin-Hammett Behavior.

Authors:  Md Nasir Uddin; John D Knight; Ettore J Rastelli; Chirine Soubra-Ghaoui; Thomas A Albright; Chia-Hua Wu; Judy I Wu; Don M Coltart
Journal:  Chemistry       Date:  2019-10-25       Impact factor: 5.236

3.  Synthesis and evaluation of new guanidine-thiourea organocatalyst for the nitro-Michael reaction: Theoretical studies on mechanism and enantioselectivity.

Authors:  Tatyana E Shubina; Matthias Freund; Sebastian Schenker; Timothy Clark; Svetlana B Tsogoeva
Journal:  Beilstein J Org Chem       Date:  2012-09-07       Impact factor: 2.883

4.  On the possibility to accelerate the thermal isomerizations of overcrowded alkene-based rotary molecular motors with electron-donating or electron-withdrawing substituents.

Authors:  Baswanth Oruganti; Bo Durbeej
Journal:  J Mol Model       Date:  2016-08-24       Impact factor: 1.810

5.  Synergistic Ion-Binding Catalysis Demonstrated via an Enantioselective, Catalytic [2,3]-Wittig Rearrangement.

Authors:  C Rose Kennedy; Jennifer A Guidera; Eric N Jacobsen
Journal:  ACS Cent Sci       Date:  2016-06-14       Impact factor: 14.553

6.  The Competing Mechanisms of Phosphate Monoester Dianion Hydrolysis.

Authors:  Fernanda Duarte; Alexandre Barrozo; Johan Åqvist; Nicholas H Williams; Shina C L Kamerlin
Journal:  J Am Chem Soc       Date:  2016-08-15       Impact factor: 15.419

7.  Allostery in the dengue virus NS3 helicase: Insights into the NTPase cycle from molecular simulations.

Authors:  Russell B Davidson; Josie Hendrix; Brian J Geiss; Martin McCullagh
Journal:  PLoS Comput Biol       Date:  2018-04-16       Impact factor: 4.475

8.  Multifunctional Oxazolone Derivative as an Optical Amplifier, Generator, and Modulator.

Authors:  Adam Szukalski; Przemysław Krawczyk; Bouchta Sahraoui; Beata Jędrzejewska
Journal:  J Phys Chem B       Date:  2022-02-18       Impact factor: 2.991

9.  A computational methodology to screen activities of enzyme variants.

Authors:  Martin R Hediger; Luca De Vico; Allan Svendsen; Werner Besenmatter; Jan H Jensen
Journal:  PLoS One       Date:  2012-12-17       Impact factor: 3.240

10.  Unveiling the role of boroxines in metal-free carbon-carbon homologations using diazo compounds and boronic acids.

Authors:  Claudio Bomio; Mikhail A Kabeshov; Arthur R Lit; Shing-Hing Lau; Janna Ehlert; Claudio Battilocchio; Steven V Ley
Journal:  Chem Sci       Date:  2017-06-15       Impact factor: 9.825

  10 in total

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