Literature DB >> 26594586

Crystal structure of the adduct (4-chloro-phen-yl)(4-hy-droxy-piperidin-1-yl)methanone-(4-chloro-phen-yl)(piperidin-1-yl)methanone (0.75/0.25).

B K Revathi1, D Reuben Jonathan2, K Kalai Sevi3, K Dhanalakshmi4, G Usha1.   

Abstract

In the title compound, 0.75C12H14ClNO2·0.25C12H14ClNO, which is an adduct comprising 0.75 4-hy-droxy-piperidin-1-yl or 0.25 4-piperidin-1-yl substituents on a common (4-chloro-phen-yl)methanone component; the dihedral angles between the benzene ring and the two piperidine rings are 51.6 (3) and 89.5 (7)°, respectively. The hy-droxy-piperidine ring is in a bis-ectional oriention (bi) with the phenyl ring. In the crystal, inter-molecular O-H⋯O hydrogen bonds between the hy-droxy-piperidine group and the keto O atom lead to the formation of chains extending along the c- axis direction.

Entities:  

Keywords:  adduct; crystal structure; hydrogen bonding; piperidine derivative

Year:  2015        PMID: 26594586      PMCID: PMC4645011          DOI: 10.1107/S2056989015020265

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis, see: Revathi et al. (2015 ▸). For the biological activity of piperidine derivatives, see: Ramalingan et al. (2004 ▸); Sargent & May (1970 ▸); Rubiralta et al. (1991 ▸). For related structures, see: Revathi et al. (2015 ▸); Prathebha et al. (2015 ▸).

Experimental

Crystal data

0.75C12H14ClNO2·0.25C12H14ClNO M = 235.69 Orthorhombic, a = 24.312 (4) Å b = 6.1628 (10) Å c = 7.9654 (11) Å V = 1193.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 293 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▸) T min = 0.930, T max = 0.941 17321 measured reflections 2356 independent reflections 1539 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.144 S = 1.02 2356 reflections 200 parameters 121 restraints H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack x determined using 583 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) Absolute structure parameter: 0.03 (3)

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: APEX2 and SAINT (Bruker, 2004 ▸); data reduction: SAINT and XPREP (Bruker, 2004 ▸); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Bruno et al., 2002 ▸); software used to prepare material for publication: SHELXL2014. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015020265/zs2348sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015020265/zs2348Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015020265/zs2348Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015020265/zs2348fig1.tif The mol­ecular structure of the major (73%) 4-hy­droxy­piperidin-1-yl substituted component of the title adduct, showing atom numbering, with displacement ellipsoids drawn at the 30% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015020265/zs2348fig2.tif The mol­ecular structure of the minor (25%) piperidin-1-yl substituted component of the title adduct, showing atom numbering, with displacement ellipsoids drawn at the 30% probability level. The bonds for the minor-occupancy piperidinyl group are shown as dashed lines Click here for additional data file. . DOI: 10.1107/S2056989015020265/zs2348fig3.tif The packing of the mol­ecules in the crystal structure. The dashed lines indicate the O—H⋯O hydrogen bonds and weak inter-chain C—H⋯Cl inter­actions. CCDC reference: 1433393 Additional supporting information: crystallographic information; 3D view; checkCIF report
0.75C12H14ClNO2·0.25C12H14ClNODx = 1.312 Mg m3
Mr = 235.69Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pca21Cell parameters from 3452 reflections
a = 24.312 (4) Åθ = 2.8–23.2°
b = 6.1628 (10) ŵ = 0.30 mm1
c = 7.9654 (11) ÅT = 293 K
V = 1193.5 (3) Å3Block, colourless
Z = 40.25 × 0.20 × 0.20 mm
F(000) = 496
Bruker Kappa APEXII CCD diffractometer1539 reflections with I > 2σ(I)
Radiation source: Sealed tubeRint = 0.031
ω and φ scanθmax = 26.1°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −30→30
Tmin = 0.930, Tmax = 0.941k = −7→7
17321 measured reflectionsl = −9→9
2356 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.144w = 1/[σ2(Fo2) + (0.0664P)2 + 0.3379P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2356 reflectionsΔρmax = 0.31 e Å3
200 parametersΔρmin = −0.22 e Å3
121 restraintsAbsolute structure: Flack x determined using 583 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.03 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
C10.73230 (19)0.1884 (8)0.7580 (6)0.0743 (13)
C20.7397 (2)0.3762 (10)0.6747 (8)0.0909 (16)
H20.77480.41910.64160.109*
C30.6943 (2)0.5050 (9)0.6390 (7)0.0832 (15)
H30.69910.63530.58190.100*
C40.64254 (19)0.4423 (8)0.6867 (5)0.0656 (12)
C50.63637 (19)0.2510 (8)0.7729 (8)0.0811 (14)
H50.60160.20760.80820.097*
C60.6815 (2)0.1230 (8)0.8074 (8)0.0890 (16)
H60.6771−0.00760.86430.107*
C70.5944 (2)0.5838 (9)0.6575 (6)0.0773 (14)
C80.5243 (3)0.7357 (12)0.4730 (9)0.0749 (18)0.75
H8A0.51550.81650.57390.090*0.75
H8B0.49180.65650.43810.090*0.75
C90.5419 (3)0.8877 (11)0.3372 (9)0.0681 (17)0.75
H9A0.57270.97410.37660.082*0.75
H9B0.51190.98550.31090.082*0.75
C100.5587 (3)0.7668 (13)0.1804 (9)0.0711 (19)0.75
H100.52630.68970.13750.085*0.75
C110.6028 (3)0.5988 (12)0.2233 (8)0.0690 (16)0.75
H11A0.61020.51090.12490.083*0.75
H11B0.63650.67320.25370.083*0.75
C120.5859 (3)0.4567 (10)0.3627 (8)0.0640 (14)0.75
H12A0.55540.36600.32690.077*0.75
H12B0.61620.36270.39350.077*0.75
N10.5694 (2)0.5841 (9)0.5067 (6)0.0659 (14)0.75
O20.5746 (2)0.8993 (9)0.0685 (7)0.0870 (14)0.75
H2A0.59240.8339−0.00300.105 (17)*0.75
C8'0.5628 (8)0.863 (3)0.454 (3)0.069 (4)0.25
H8'10.58500.97580.40310.083*0.25
H8'20.54660.92030.55560.083*0.25
C9'0.5169 (8)0.795 (4)0.331 (2)0.072 (5)0.25
H9'10.49390.92100.31070.087*0.25
H9'20.49420.68720.38650.087*0.25
C10'0.5350 (9)0.703 (4)0.160 (2)0.077 (6)0.25
H10A0.55590.80730.09530.093*0.25
H10B0.50400.65100.09460.093*0.25
C11'0.5714 (8)0.515 (3)0.226 (3)0.069 (5)0.25
H11C0.54750.41280.28380.082*0.25
H11D0.58640.43960.12950.082*0.25
C12'0.6196 (7)0.568 (3)0.345 (2)0.057 (4)0.25
H12C0.63830.43500.37750.069*0.25
H12D0.64580.66100.28870.069*0.25
N1'0.5977 (6)0.677 (2)0.4953 (15)0.053 (3)0.25
O10.57385 (17)0.6828 (7)0.7749 (5)0.1119 (14)
Cl10.78823 (7)0.0274 (3)0.7998 (3)0.1274 (8)
U11U22U33U12U13U23
C10.067 (3)0.080 (3)0.076 (3)0.011 (2)−0.016 (2)−0.004 (3)
C20.070 (3)0.098 (4)0.104 (4)−0.010 (3)0.001 (3)0.003 (4)
C30.091 (4)0.076 (3)0.083 (4)−0.003 (3)−0.002 (3)0.018 (3)
C40.073 (3)0.071 (3)0.053 (2)0.012 (2)0.002 (2)0.010 (2)
C50.066 (3)0.080 (3)0.097 (3)0.007 (3)0.011 (3)0.019 (3)
C60.092 (4)0.072 (3)0.103 (4)0.017 (3)0.001 (3)0.023 (3)
C70.090 (3)0.082 (3)0.061 (2)0.029 (3)0.005 (2)0.006 (2)
C80.074 (4)0.076 (4)0.075 (4)0.031 (3)0.005 (3)0.011 (3)
C90.080 (5)0.057 (3)0.068 (4)0.018 (3)−0.012 (3)0.004 (3)
C100.067 (4)0.081 (4)0.066 (3)0.020 (3)−0.018 (3)−0.003 (3)
C110.067 (4)0.082 (4)0.058 (4)0.020 (3)−0.004 (3)−0.004 (3)
C120.063 (3)0.056 (3)0.074 (3)0.017 (3)−0.010 (3)−0.008 (3)
N10.072 (3)0.064 (3)0.062 (3)0.023 (3)−0.001 (2)0.006 (2)
O20.097 (4)0.088 (3)0.076 (3)0.017 (3)0.004 (3)0.004 (3)
C8'0.079 (9)0.064 (8)0.064 (9)0.032 (7)−0.003 (8)−0.001 (6)
C9'0.067 (9)0.080 (12)0.071 (9)0.034 (8)−0.001 (7)−0.007 (9)
C10'0.057 (11)0.085 (12)0.090 (9)0.012 (9)0.012 (7)−0.020 (8)
C11'0.054 (8)0.079 (10)0.073 (9)0.006 (7)0.002 (7)−0.023 (7)
C12'0.050 (7)0.059 (9)0.062 (7)0.009 (7)0.001 (6)−0.008 (6)
N1'0.051 (7)0.052 (6)0.055 (4)0.012 (5)−0.004 (4)−0.004 (4)
O10.121 (3)0.147 (3)0.067 (2)0.057 (3)0.008 (2)−0.004 (3)
Cl10.0952 (10)0.1290 (13)0.1579 (17)0.0462 (9)−0.0304 (12)−0.0134 (14)
C1—C21.346 (7)C10—H100.9800
C1—C61.358 (7)C11—C121.472 (9)
C1—Cl11.716 (5)C11—H11A0.9700
C2—C31.390 (8)C11—H11B0.9700
C2—H20.9300C12—N11.447 (8)
C3—C41.370 (7)C12—H12A0.9700
C3—H30.9300C12—H12B0.9700
C4—C51.373 (7)O2—H2A0.8200
C4—C71.478 (7)C8'—N1'1.460 (16)
C5—C61.378 (6)C8'—C9'1.54 (2)
C5—H50.9300C8'—H8'10.9700
C6—H60.9300C8'—H8'20.9700
C7—O11.223 (6)C9'—C10'1.540 (12)
C7—N11.346 (7)C9'—H9'10.9700
C7—N1'1.417 (13)C9'—H9'20.9700
C8—N11.465 (7)C10'—C11'1.552 (12)
C8—C91.494 (9)C10'—H10A0.9700
C8—H8A0.9700C10'—H10B0.9700
C8—H8B0.9700C11'—C12'1.542 (19)
C9—C101.510 (9)C11'—H11C0.9700
C9—H9A0.9700C11'—H11D0.9700
C9—H9B0.9700C12'—N1'1.474 (16)
C10—O21.269 (9)C12'—H12C0.9700
C10—C111.529 (8)C12'—H12D0.9700
C2—C1—C6121.4 (5)C10—C11—H11B109.2
C2—C1—Cl1119.1 (4)H11A—C11—H11B107.9
C6—C1—Cl1119.5 (4)N1—C12—C11110.6 (5)
C1—C2—C3119.0 (5)N1—C12—H12A109.5
C1—C2—H2120.5C11—C12—H12A109.5
C3—C2—H2120.5N1—C12—H12B109.5
C4—C3—C2120.8 (5)C11—C12—H12B109.5
C4—C3—H3119.6H12A—C12—H12B108.1
C2—C3—H3119.6C7—N1—C12125.6 (5)
C3—C4—C5118.8 (4)C7—N1—C8120.2 (5)
C3—C4—C7121.1 (4)C12—N1—C8114.1 (5)
C5—C4—C7119.9 (4)C10—O2—H2A109.5
C4—C5—C6120.3 (5)N1'—C8'—C9'110.8 (15)
C4—C5—H5119.9N1'—C8'—H8'1109.5
C6—C5—H5119.9C9'—C8'—H8'1109.5
C1—C6—C5119.7 (5)N1'—C8'—H8'2109.5
C1—C6—H6120.1C9'—C8'—H8'2109.5
C5—C6—H6120.1H8'1—C8'—H8'2108.1
O1—C7—N1119.8 (5)C8'—C9'—C10'116.9 (17)
O1—C7—N1'121.2 (6)C8'—C9'—H9'1108.1
O1—C7—C4119.8 (4)C10'—C9'—H9'1108.1
N1—C7—C4119.9 (5)C8'—C9'—H9'2108.1
N1'—C7—C4109.8 (6)C10'—C9'—H9'2108.1
N1—C8—C9108.5 (6)H9'1—C9'—H9'2107.3
N1—C8—H8A110.0C9'—C10'—C11'98.0 (15)
C9—C8—H8A110.0C9'—C10'—H10A112.2
N1—C8—H8B110.0C11'—C10'—H10A112.2
C9—C8—H8B110.0C9'—C10'—H10B112.2
H8A—C8—H8B108.4C11'—C10'—H10B112.2
C8—C9—C10111.5 (6)H10A—C10'—H10B109.8
C8—C9—H9A109.3C12'—C11'—C10'118.9 (17)
C10—C9—H9A109.3C12'—C11'—H11C107.6
C8—C9—H9B109.3C10'—C11'—H11C107.6
C10—C9—H9B109.3C12'—C11'—H11D107.6
H9A—C9—H9B108.0C10'—C11'—H11D107.6
O2—C10—C9110.2 (6)H11C—C11'—H11D107.0
O2—C10—C11112.2 (6)N1'—C12'—C11'108.7 (13)
C9—C10—C11109.8 (5)N1'—C12'—H12C109.9
O2—C10—H10108.2C11'—C12'—H12C109.9
C9—C10—H10108.2N1'—C12'—H12D109.9
C11—C10—H10108.2C11'—C12'—H12D109.9
C12—C11—C10112.0 (6)H12C—C12'—H12D108.3
C12—C11—H11A109.2C7—N1'—C8'119.5 (12)
C10—C11—H11A109.2C7—N1'—C12'125.0 (12)
C12—C11—H11B109.2C8'—N1'—C12'112.7 (13)
C6—C1—C2—C30.0 (8)C10—C11—C12—N1−53.4 (9)
Cl1—C1—C2—C3179.1 (5)O1—C7—N1—C12−173.2 (6)
C1—C2—C3—C4−0.3 (8)C4—C7—N1—C12−1.0 (10)
C2—C3—C4—C50.9 (8)O1—C7—N1—C812.3 (10)
C2—C3—C4—C7176.6 (5)C4—C7—N1—C8−175.4 (6)
C3—C4—C5—C6−1.3 (8)C11—C12—N1—C7−116.7 (7)
C7—C4—C5—C6−177.0 (5)C11—C12—N1—C858.0 (9)
C2—C1—C6—C5−0.3 (9)C9—C8—N1—C7115.9 (7)
Cl1—C1—C6—C5−179.5 (5)C9—C8—N1—C12−59.2 (9)
C4—C5—C6—C11.0 (9)N1'—C8'—C9'—C10'−60 (3)
C3—C4—C7—O1−104.8 (7)C8'—C9'—C10'—C11'56 (2)
C5—C4—C7—O170.8 (7)C9'—C10'—C11'—C12'−57 (2)
C3—C4—C7—N182.9 (7)C10'—C11'—C12'—N1'59 (2)
C5—C4—C7—N1−101.4 (6)O1—C7—N1'—C8'−18.1 (18)
C3—C4—C7—N1'42.4 (9)C4—C7—N1'—C8'−164.8 (13)
C5—C4—C7—N1'−142.0 (8)O1—C7—N1'—C12'−177.3 (12)
N1—C8—C9—C1056.9 (9)C4—C7—N1'—C12'36.0 (17)
C8—C9—C10—O2−178.5 (7)C9'—C8'—N1'—C7−108.1 (19)
C8—C9—C10—C11−54.4 (9)C9'—C8'—N1'—C12'54 (2)
O2—C10—C11—C12175.3 (7)C11'—C12'—N1'—C7108.5 (19)
C9—C10—C11—C1252.4 (9)C11'—C12'—N1'—C8'−52 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O1i0.822.052.693 (7)135
C12′—H12D···Cl1ii0.972.773.63 (2)148
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O2H2AO1i 0.822.052.693(7)135

Symmetry code: (i) .

  4 in total

1.  Agonists--antagonists derived from desomorphine and metopon.

Authors:  L J Sargent; E L May
Journal:  J Med Chem       Date:  1970-11       Impact factor: 7.446

2.  Synthesis and study of antibacterial and antifungal activities of novel 1-[2-(benzoxazol-2-yl)ethoxy]- 2,6-diarylpiperidin-4-ones.

Authors:  C Ramalingan; S Balasubramanian; S Kabilan; M Vasudevan
Journal:  Eur J Med Chem       Date:  2004-06       Impact factor: 6.514

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

4.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.