Literature DB >> 26594584

Crystal structure of 3-(2-nitro-phen-yl)-1-(1-phenyl-sulfonyl-1H-indol-3-yl)propan-1-one.

M Umadevi1, Potharaju Raju2, R Yamuna3, Arasambattu K Mohanakrishnan2, G Chakkaravarthi4.   

Abstract

In the title compound, C23H18N2O5S, the phenyl and benzene rings subtend dihedral angles of 78.18 (10) and 30.18 (9)°, respectively, with the indole ring system (r.m.s. deviation = 0.022 Å). The crystal structure features weak C-H⋯O and C-H⋯π inter-actions, which link the mol-ecules into a three-dimensional network.

Entities:  

Keywords:  C—H⋯π inter­actions; crystal structure; hydrogen bonding; indole

Year:  2015        PMID: 26594584      PMCID: PMC4645035          DOI: 10.1107/S2056989015020162

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of indole derivatives, see: Andreev et al. (2015 ▸); Kolocouris et al. (1994 ▸). For related structures, see: Chakkaravarthi et al. (2007 ▸, 2008 ▸).

Experimental

Crystal data

C23H18N2O5S M = 434.45 Monoclinic, a = 9.0224 (7) Å b = 15.4581 (10) Å c = 15.1347 (10) Å β = 106.349 (2)° V = 2025.5 (2) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 295 K 0.26 × 0.24 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.950, T max = 0.961 29555 measured reflections 6149 independent reflections 4060 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.144 S = 1.09 6149 reflections 280 parameters 3 restraints H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.32 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: SAINT (Bruker, 2004 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015020162/hb7524sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015020162/hb7524Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015020162/hb7524Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015020162/hb7524fig1.tif The mol­ecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015020162/hb7524fig2.tif The crystal packing of the title compound, viewed along the a axis. The C—H⋯O hydrogen bonds are shown as dashed lines (see Table 1). H atoms not involved in these inter­actions have been omitted for clarity. CCDC reference: 1433093 Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H18N2O5SF(000) = 904
Mr = 434.45Dx = 1.425 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7714 reflections
a = 9.0224 (7) Åθ = 2.4–28.3°
b = 15.4581 (10) ŵ = 0.20 mm1
c = 15.1347 (10) ÅT = 295 K
β = 106.349 (2)°Block, colourless
V = 2025.5 (2) Å30.26 × 0.24 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer6149 independent reflections
Radiation source: fine-focus sealed tube4060 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
ω and φ scanθmax = 31.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→11
Tmin = 0.950, Tmax = 0.961k = −21→22
29555 measured reflectionsl = −21→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.048P)2 + 1.0896P] where P = (Fo2 + 2Fc2)/3
6149 reflections(Δ/σ)max < 0.001
280 parametersΔρmax = 0.35 e Å3
3 restraintsΔρmin = −0.32 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7579 (2)−0.01858 (14)0.38658 (13)0.0384 (4)
C20.6908 (3)−0.05928 (17)0.44691 (16)0.0514 (6)
H20.6403−0.11200.43180.062*
C30.7005 (3)−0.0197 (2)0.53057 (17)0.0663 (8)
H30.6565−0.04600.57240.080*
C40.7746 (3)0.0580 (2)0.55179 (18)0.0690 (8)
H40.78010.08420.60790.083*
C50.8408 (3)0.09752 (19)0.49126 (18)0.0655 (7)
H50.89070.15040.50650.079*
C60.8337 (3)0.05935 (16)0.40815 (16)0.0527 (6)
H60.87930.08570.36710.063*
C70.4643 (2)−0.01056 (13)0.18344 (12)0.0327 (4)
C80.3702 (2)−0.05590 (14)0.22590 (14)0.0400 (5)
H80.4111−0.09320.27490.048*
C90.2134 (2)−0.04298 (15)0.19192 (15)0.0445 (5)
H90.1467−0.07150.21910.053*
C100.1528 (2)0.01177 (15)0.11793 (15)0.0445 (5)
H100.04630.01840.09610.053*
C110.2462 (2)0.05662 (13)0.07591 (14)0.0390 (4)
H110.20390.09270.02600.047*
C120.4060 (2)0.04658 (12)0.11020 (12)0.0314 (4)
C130.5371 (2)0.08392 (13)0.08696 (13)0.0330 (4)
C140.6664 (2)0.04867 (13)0.14399 (13)0.0349 (4)
H140.76690.06180.14380.042*
C150.5289 (2)0.15065 (14)0.01681 (14)0.0407 (5)
C160.6745 (2)0.17783 (14)−0.00516 (13)0.0365 (4)
H16A0.72360.1273−0.02250.044*
H16B0.74530.20270.04940.044*
C170.6424 (2)0.24371 (14)−0.08307 (13)0.0375 (4)
H17A0.55080.2259−0.13060.045*
H17B0.62010.2991−0.05960.045*
C180.7729 (2)0.25523 (12)−0.12581 (12)0.0331 (4)
C190.7489 (2)0.27562 (13)−0.21829 (13)0.0375 (4)
C200.8658 (3)0.27853 (15)−0.26069 (16)0.0512 (6)
H200.84330.2895−0.32350.061*
C211.0150 (3)0.26509 (17)−0.2093 (2)0.0612 (7)
H211.09540.2681−0.23640.073*
C221.0444 (3)0.24708 (17)−0.11702 (19)0.0583 (7)
H221.14570.2387−0.08140.070*
C230.9255 (2)0.24134 (15)−0.07669 (15)0.0452 (5)
H230.94850.2277−0.01440.054*
N10.62637 (18)−0.00978 (11)0.20252 (11)0.0368 (4)
N20.5930 (2)0.29460 (14)−0.27675 (13)0.0504 (4)
O10.68799 (19)−0.15240 (10)0.28042 (12)0.0548 (4)
O20.89596 (16)−0.05570 (11)0.26200 (11)0.0528 (4)
O30.40514 (19)0.18257 (14)−0.02227 (16)0.0843 (7)
O40.5110 (2)0.34181 (14)−0.24777 (13)0.0738 (6)
O50.5554 (2)0.26312 (16)−0.35371 (12)0.0846 (7)
S10.75288 (6)−0.06854 (4)0.28195 (4)0.04012 (14)
U11U22U33U12U13U23
C10.0297 (10)0.0474 (12)0.0366 (10)0.0047 (8)0.0069 (8)0.0104 (9)
C20.0462 (13)0.0614 (15)0.0479 (13)−0.0007 (11)0.0153 (10)0.0164 (11)
C30.0641 (17)0.094 (2)0.0461 (13)0.0018 (16)0.0239 (12)0.0168 (14)
C40.0702 (18)0.092 (2)0.0437 (13)0.0085 (16)0.0135 (12)−0.0041 (14)
C50.0732 (18)0.0651 (17)0.0550 (15)−0.0096 (14)0.0130 (13)−0.0070 (13)
C60.0536 (14)0.0578 (15)0.0476 (13)−0.0061 (11)0.0155 (11)0.0091 (11)
C70.0253 (9)0.0404 (10)0.0338 (9)−0.0015 (7)0.0106 (7)−0.0059 (8)
C80.0353 (10)0.0500 (12)0.0379 (10)−0.0038 (9)0.0153 (8)0.0015 (9)
C90.0327 (10)0.0569 (13)0.0499 (12)−0.0094 (9)0.0217 (9)−0.0047 (10)
C100.0249 (9)0.0551 (13)0.0551 (12)−0.0025 (9)0.0137 (9)−0.0089 (11)
C110.0297 (10)0.0428 (11)0.0431 (11)0.0032 (8)0.0078 (8)−0.0022 (9)
C120.0278 (9)0.0348 (9)0.0327 (9)−0.0012 (7)0.0104 (7)−0.0058 (7)
C130.0285 (9)0.0379 (10)0.0345 (9)−0.0014 (7)0.0118 (7)−0.0030 (8)
C140.0262 (9)0.0450 (11)0.0356 (9)−0.0024 (8)0.0121 (7)0.0008 (8)
C150.0320 (10)0.0450 (11)0.0458 (11)0.0016 (9)0.0121 (8)0.0065 (9)
C160.0304 (10)0.0447 (11)0.0333 (9)−0.0010 (8)0.0071 (7)0.0069 (8)
C170.0341 (10)0.0439 (11)0.0341 (10)0.0030 (8)0.0088 (8)0.0061 (8)
C180.0316 (9)0.0346 (9)0.0312 (9)−0.0012 (8)0.0057 (7)0.0035 (7)
C190.0391 (9)0.0370 (10)0.0352 (9)0.0011 (8)0.0084 (7)0.0092 (8)
C200.0593 (15)0.0524 (13)0.0483 (12)0.0049 (11)0.0258 (11)0.0171 (10)
C210.0493 (14)0.0625 (16)0.0833 (19)0.0094 (12)0.0377 (13)0.0260 (14)
C220.0299 (11)0.0644 (16)0.0780 (17)0.0042 (10)0.0108 (11)0.0224 (13)
C230.0353 (11)0.0550 (13)0.0400 (11)−0.0012 (9)0.0020 (8)0.0097 (10)
N10.0247 (7)0.0512 (10)0.0353 (8)−0.0006 (7)0.0096 (6)0.0061 (7)
N20.0463 (9)0.0630 (12)0.0374 (10)0.0006 (8)0.0042 (7)0.0201 (9)
O10.0543 (10)0.0441 (9)0.0673 (11)0.0027 (7)0.0192 (8)0.0051 (8)
O20.0296 (8)0.0740 (11)0.0580 (9)0.0098 (7)0.0173 (7)0.0095 (8)
O30.0350 (9)0.1001 (16)0.1185 (17)0.0172 (9)0.0228 (10)0.0669 (14)
O40.0556 (11)0.0885 (14)0.0741 (13)0.0308 (9)0.0130 (9)0.0299 (10)
O50.0781 (14)0.1281 (19)0.0350 (9)−0.0157 (13)−0.0045 (9)0.0106 (11)
S10.0301 (2)0.0473 (3)0.0443 (3)0.0062 (2)0.0126 (2)0.0080 (2)
C1—C61.378 (3)C14—N11.383 (2)
C1—C21.381 (3)C14—H140.9300
C1—S11.751 (2)C15—O31.212 (3)
C2—C31.387 (4)C15—C161.502 (3)
C2—H20.9300C16—C171.523 (3)
C3—C41.367 (4)C16—H16A0.9700
C3—H30.9300C16—H16B0.9700
C4—C51.370 (4)C17—C181.505 (3)
C4—H40.9300C17—H17A0.9700
C5—C61.374 (3)C17—H17B0.9700
C5—H50.9300C18—C231.385 (3)
C6—H60.9300C18—C191.391 (3)
C7—C81.391 (3)C19—C201.381 (3)
C7—C121.399 (3)C19—N21.465 (3)
C7—N11.408 (2)C20—C211.368 (4)
C8—C91.377 (3)C20—H200.9300
C8—H80.9300C21—C221.375 (4)
C9—C101.387 (3)C21—H210.9300
C9—H90.9300C22—C231.379 (3)
C10—C111.377 (3)C22—H220.9300
C10—H100.9300C23—H230.9300
C11—C121.397 (3)N1—S11.6736 (17)
C11—H110.9300N2—O41.207 (3)
C12—C131.445 (2)N2—O51.219 (3)
C13—C141.355 (3)O1—S11.4199 (17)
C13—C151.467 (3)O2—S11.4200 (15)
C6—C1—C2121.5 (2)C13—C15—C16119.20 (17)
C6—C1—S1118.98 (16)C15—C16—C17111.76 (16)
C2—C1—S1119.51 (18)C15—C16—H16A109.3
C1—C2—C3118.4 (2)C17—C16—H16A109.3
C1—C2—H2120.8C15—C16—H16B109.3
C3—C2—H2120.8C17—C16—H16B109.3
C4—C3—C2120.2 (2)H16A—C16—H16B107.9
C4—C3—H3119.9C18—C17—C16114.23 (16)
C2—C3—H3119.9C18—C17—H17A108.7
C3—C4—C5120.7 (3)C16—C17—H17A108.7
C3—C4—H4119.6C18—C17—H17B108.7
C5—C4—H4119.6C16—C17—H17B108.7
C4—C5—C6120.2 (3)H17A—C17—H17B107.6
C4—C5—H5119.9C23—C18—C19115.16 (18)
C6—C5—H5119.9C23—C18—C17122.06 (17)
C5—C6—C1119.0 (2)C19—C18—C17122.69 (17)
C5—C6—H6120.5C20—C19—C18123.49 (19)
C1—C6—H6120.5C20—C19—N2116.22 (18)
C8—C7—C12122.82 (17)C18—C19—N2120.29 (18)
C8—C7—N1130.07 (18)C21—C20—C19119.3 (2)
C12—C7—N1107.11 (16)C21—C20—H20120.4
C9—C8—C7116.8 (2)C19—C20—H20120.4
C9—C8—H8121.6C20—C21—C22119.1 (2)
C7—C8—H8121.6C20—C21—H21120.4
C8—C9—C10121.31 (19)C22—C21—H21120.4
C8—C9—H9119.3C21—C22—C23120.7 (2)
C10—C9—H9119.3C21—C22—H22119.6
C11—C10—C9121.80 (19)C23—C22—H22119.6
C11—C10—H10119.1C22—C23—C18122.2 (2)
C9—C10—H10119.1C22—C23—H23118.9
C10—C11—C12118.3 (2)C18—C23—H23118.9
C10—C11—H11120.8C14—N1—C7108.51 (15)
C12—C11—H11120.8C14—N1—S1124.51 (13)
C11—C12—C7118.88 (17)C7—N1—S1126.97 (13)
C11—C12—C13134.02 (18)O4—N2—O5123.7 (2)
C7—C12—C13107.10 (16)O4—N2—C19119.0 (2)
C14—C13—C12107.52 (17)O5—N2—C19117.3 (2)
C14—C13—C15127.04 (17)O1—S1—O2121.30 (10)
C12—C13—C15125.39 (17)O1—S1—N1106.80 (9)
C13—C14—N1109.73 (16)O2—S1—N1104.39 (9)
C13—C14—H14125.1O1—S1—C1108.84 (10)
N1—C14—H14125.1O2—S1—C1109.71 (10)
O3—C15—C13119.40 (19)N1—S1—C1104.41 (9)
O3—C15—C16121.40 (19)
C6—C1—C2—C30.3 (3)C23—C18—C19—C202.7 (3)
S1—C1—C2—C3178.00 (18)C17—C18—C19—C20−173.8 (2)
C1—C2—C3—C40.2 (4)C23—C18—C19—N2−177.95 (19)
C2—C3—C4—C5−0.3 (4)C17—C18—C19—N25.6 (3)
C3—C4—C5—C6−0.1 (4)C18—C19—C20—C21−3.4 (4)
C4—C5—C6—C10.6 (4)N2—C19—C20—C21177.3 (2)
C2—C1—C6—C5−0.7 (3)C19—C20—C21—C221.4 (4)
S1—C1—C6—C5−178.44 (19)C20—C21—C22—C230.9 (4)
C12—C7—C8—C90.6 (3)C21—C22—C23—C18−1.5 (4)
N1—C7—C8—C9179.64 (19)C19—C18—C23—C22−0.2 (3)
C7—C8—C9—C100.9 (3)C17—C18—C23—C22176.3 (2)
C8—C9—C10—C11−1.0 (3)C13—C14—N1—C7−1.3 (2)
C9—C10—C11—C12−0.6 (3)C13—C14—N1—S1178.71 (14)
C10—C11—C12—C72.1 (3)C8—C7—N1—C14−177.3 (2)
C10—C11—C12—C13−177.6 (2)C12—C7—N1—C141.8 (2)
C8—C7—C12—C11−2.2 (3)C8—C7—N1—S12.6 (3)
N1—C7—C12—C11178.61 (17)C12—C7—N1—S1−178.24 (14)
C8—C7—C12—C13177.62 (18)C20—C19—N2—O4−135.8 (2)
N1—C7—C12—C13−1.6 (2)C18—C19—N2—O444.9 (3)
C11—C12—C13—C14−179.4 (2)C20—C19—N2—O542.3 (3)
C7—C12—C13—C140.8 (2)C18—C19—N2—O5−137.1 (2)
C11—C12—C13—C153.0 (3)C14—N1—S1—O1−139.88 (17)
C7—C12—C13—C15−176.77 (18)C7—N1—S1—O140.16 (19)
C12—C13—C14—N10.3 (2)C14—N1—S1—O2−10.27 (19)
C15—C13—C14—N1177.84 (19)C7—N1—S1—O2169.78 (17)
C14—C13—C15—O3−172.1 (2)C14—N1—S1—C1104.91 (17)
C12—C13—C15—O35.0 (3)C7—N1—S1—C1−75.05 (18)
C14—C13—C15—C168.0 (3)C6—C1—S1—O1172.14 (17)
C12—C13—C15—C16−174.90 (18)C2—C1—S1—O1−5.6 (2)
O3—C15—C16—C17−3.1 (3)C6—C1—S1—O237.3 (2)
C13—C15—C16—C17176.79 (18)C2—C1—S1—O2−140.47 (17)
C15—C16—C17—C18−164.04 (17)C6—C1—S1—N1−74.09 (18)
C16—C17—C18—C23−28.2 (3)C2—C1—S1—N1108.15 (18)
C16—C17—C18—C19148.00 (19)
D—H···AD—HH···AD···AD—H···A
C9—H9···O2i0.932.543.328 (2)143
C22—H22···O3ii0.932.423.319 (3)163
C23—H23···O5iii0.932.363.247 (3)160
C16—H16A···Cg3iv0.972.733.565 (2)144
Table 1

Hydrogen-bond geometry (, )

Cg3 is the centroid of the C7C12 ring.

DHA DHHA D A DHA
C9H9O2i 0.932.543.328(2)143
C22H22O3ii 0.932.423.319(3)163
C23H23O5iii 0.932.363.247(3)160
C16H16A Cg3iv 0.972.733.565(2)144

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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