Literature DB >> 26594580

Crystal structure of 2-{(R)-[1-(4-bromo-phen-yl)eth-yl]imino-meth-yl}-4-(phenyl-diazen-yl)phenol, a chiral photochromic Schiff base.

Ryoji Moriwaki1, Takashiro Akitsu1.   

Abstract

The title chiral photochromic Schiff base compound, C21H18BrN3O, was synthesized from (R)-(+)-1-(4-bromo-phen-yl)ethyl-amine and the salicyl-aldehyde of an azo-benzene derivative. The mol-ecule corresponds to the phenol-imine tautomer, the C=N and N-C bond distances being 1.285 (3) and 1.470 (3) Å, respectively. The diazenyl group adopts a trans form, with an N=N distance of 1.256 (3) Å. The hy-droxy group is involved in intra-molecular O-H⋯N hydrogen bonding. In the crystal, C-H⋯π inter-actions consolidate the crystal packing of one-dimensional chains, which exhibits short inter-molecular Br⋯C contacts of 3.400 (3) Å.

Entities:  

Keywords:  Schiff base; azo­benzene; crystal structure; photochromic

Year:  2015        PMID: 26594580      PMCID: PMC4645026          DOI: 10.1107/S2056989015019866

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For applications of (chiral) photochromic Schiff base compounds, see: Akitsu & Einaga (2006b ▸); Akitsu et al. (2004 ▸); Aritake et al. (2010 ▸); Miura et al. (2009 ▸). For the crystal structures of related compounds, see: Akitsu & Einaga (2005a ▸,b ▸, 2006a ▸); Akitsu (2007 ▸); Akitsu & Itoh (2010 ▸); Aslantas et al. (2007 ▸); Hadjoudis & Mavridis (2004 ▸); Khandar & Rezvani (1999 ▸).

Experimental

Crystal data

C21H18BrN3O M = 408.29 Orthorhombic a = 7.271 (3) Å b = 41.901 (15) Å c = 5.952 (2) Å V = 1813.3 (11) Å3 Z = 4 Mo Kα radiation μ = 2.28 mm−1 T = 113 K 0.37 × 0.23 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996 ▸) T min = 0.486, T max = 0.833 10349 measured reflections 4176 independent reflections 3723 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.047 S = 1.01 4176 reflections 237 parameters H-atom parameters constrained Δρmax = 0.57 e Å−3 Δρmin = −0.40 e Å−3 Absolute structure: Flack x determined using 1360 quotients [(I +) − (I −)]/[(I +) + (I −)] (Parsons et al., 2013 ▸) Absolute structure parameter: 0.005 (4)

Data collection: APEX2 (Bruker, 1998 ▸); cell refinement: SAINT (Bruker, 1998 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015019866/cv5499sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015019866/cv5499Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015019866/cv5499Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015019866/cv5499fig1.tif Mol­ecular structure of (I) showing the atomic numbering and 50% probability displacement ellipsoids. CCDC reference: 1432412 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H18BrN3ODx = 1.496 Mg m3
Mr = 408.29Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P21212Cell parameters from 10349 reflections
a = 7.271 (3) Åθ = 2.8–27.7°
b = 41.901 (15) ŵ = 2.28 mm1
c = 5.952 (2) ÅT = 113 K
V = 1813.3 (11) Å3Needle, orange
Z = 40.37 × 0.23 × 0.08 mm
F(000) = 832
Bruker APEXII CCD diffractometer4176 independent reflections
Radiation source: fine-focus sealed tube3723 reflections with I > 2σ(I)
Detector resolution: 8.333 pixels mm-1Rint = 0.027
φ and ω scansθmax = 27.7°, θmin = 2.8°
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996)h = −8→9
Tmin = 0.486, Tmax = 0.833k = −54→33
10349 measured reflectionsl = −7→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.026H-atom parameters constrained
wR(F2) = 0.047w = 1/[σ2(Fo2)] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.002
4176 reflectionsΔρmax = 0.57 e Å3
237 parametersΔρmin = −0.40 e Å3
0 restraintsAbsolute structure: Flack x determined using 1360 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.005 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Br11.09221 (4)0.26333 (2)0.94955 (5)0.02934 (9)
C10.2882 (4)0.55533 (6)0.2777 (4)0.0162 (6)
H10.3470.540.1850.019*
C20.2286 (3)0.54700 (5)0.4928 (4)0.0132 (6)
C30.2610 (4)0.58613 (6)0.2004 (5)0.0191 (6)
H30.30330.59190.05510.023*
C40.1732 (4)0.60841 (6)0.3323 (5)0.0193 (7)
H40.15310.62940.27660.023*
C50.1136 (4)0.60022 (5)0.5478 (5)0.0189 (6)
H50.05490.61570.63970.023*
C60.1400 (3)0.56948 (5)0.6277 (4)0.0153 (6)
H60.0980.56380.77330.018*
C70.3225 (3)0.45296 (5)0.6999 (4)0.0130 (6)
H70.36790.45790.55430.016*
C80.2539 (4)0.47727 (5)0.8343 (4)0.0133 (6)
C90.1948 (3)0.47027 (5)1.0517 (5)0.0147 (5)
H90.15380.4871.14730.018*
C100.1954 (4)0.43923 (6)1.1290 (4)0.0147 (6)
H100.15240.43471.27620.018*
C110.2586 (3)0.41462 (5)0.9931 (4)0.0152 (6)
C120.3926 (4)0.39625 (5)0.6274 (4)0.0142 (5)
H120.43830.40150.48260.017*
C130.3259 (4)0.42154 (5)0.7748 (4)0.0120 (6)
C140.4556 (3)0.34250 (5)0.5321 (5)0.0170 (6)
H140.50280.35330.3940.02*
C150.2920 (4)0.32168 (6)0.4678 (5)0.0273 (7)
H15A0.24620.31060.60140.041*
H15B0.33050.3060.35510.041*
H15C0.19410.33510.40540.041*
C160.6884 (4)0.29788 (5)0.5224 (5)0.0206 (6)
H160.64020.29240.37910.025*
C170.6118 (4)0.32344 (5)0.6378 (4)0.0148 (6)
C180.6859 (4)0.33094 (6)0.8466 (4)0.0212 (7)
H180.6370.34840.92890.025*
C190.8302 (4)0.31341 (5)0.9371 (5)0.0220 (6)
H190.87990.31891.07960.026*
C200.9003 (4)0.28803 (5)0.8183 (4)0.0186 (6)
C210.8323 (4)0.28005 (6)0.6082 (5)0.0214 (7)
H210.88310.26280.52530.026*
N10.2355 (3)0.50990 (4)0.7656 (4)0.0149 (5)
N20.2565 (3)0.51440 (4)0.5585 (4)0.0150 (5)
N30.3906 (3)0.36692 (4)0.6905 (3)0.0169 (5)
O10.2552 (3)0.38445 (4)1.0728 (3)0.0200 (4)
H1A0.29880.3720.97580.03*
U11U22U33U12U13U23
Br10.03065 (17)0.02551 (13)0.03187 (16)0.01116 (13)−0.00603 (16)−0.00168 (14)
C10.0158 (16)0.0182 (13)0.0147 (15)−0.0033 (11)−0.0014 (12)−0.0026 (11)
C20.0111 (13)0.0139 (11)0.0148 (17)−0.0035 (9)−0.0047 (11)0.0012 (10)
C30.0191 (16)0.0228 (14)0.0154 (15)−0.0084 (12)−0.0061 (13)0.0028 (11)
C40.0186 (16)0.0148 (13)0.0246 (17)−0.0040 (11)−0.0077 (14)0.0051 (12)
C50.0162 (15)0.0147 (11)0.0258 (14)0.0011 (10)−0.0031 (16)−0.0051 (12)
C60.0130 (16)0.0177 (12)0.0151 (14)−0.0012 (10)−0.0021 (11)−0.0001 (11)
C70.0099 (14)0.0172 (12)0.0118 (14)−0.0022 (10)−0.0003 (11)0.0005 (11)
C80.0117 (15)0.0122 (12)0.0161 (15)0.0003 (10)−0.0025 (12)0.0009 (11)
C90.0127 (14)0.0186 (12)0.0128 (13)0.0002 (10)−0.0016 (14)−0.0050 (12)
C100.0140 (15)0.0229 (13)0.0071 (13)−0.0014 (11)−0.0001 (11)0.0019 (11)
C110.0119 (14)0.0159 (12)0.0176 (18)0.0004 (10)−0.0017 (11)0.0051 (10)
C120.0106 (14)0.0176 (12)0.0145 (13)0.0000 (11)−0.0009 (12)0.0013 (10)
C130.0091 (14)0.0147 (12)0.0123 (14)0.0014 (10)−0.0006 (12)0.0004 (10)
C140.0213 (16)0.0132 (11)0.0166 (14)0.0005 (10)0.0031 (13)−0.0004 (11)
C150.0249 (17)0.0213 (13)0.0357 (18)−0.0018 (11)−0.0050 (16)−0.0010 (14)
C160.0267 (16)0.0190 (13)0.0162 (16)−0.0006 (11)−0.0005 (14)−0.0027 (11)
C170.0183 (15)0.0101 (11)0.0159 (13)−0.0032 (11)0.0042 (13)0.0015 (10)
C180.0292 (18)0.0126 (12)0.0219 (16)0.0034 (11)−0.0003 (14)−0.0041 (11)
C190.0277 (16)0.0200 (12)0.0182 (14)0.0008 (11)−0.0032 (15)−0.0047 (13)
C200.0186 (15)0.0148 (12)0.0224 (15)0.0015 (12)0.0000 (15)0.0052 (11)
C210.0271 (17)0.0166 (13)0.0206 (17)0.0048 (11)0.0045 (13)−0.0051 (11)
N10.0144 (13)0.0154 (11)0.0149 (13)−0.0001 (9)0.0004 (10)0.0007 (9)
N20.0160 (12)0.0145 (10)0.0146 (12)−0.0005 (8)0.0010 (12)0.0021 (10)
N30.0157 (13)0.0151 (10)0.0198 (12)0.0015 (9)0.0020 (12)0.0012 (9)
O10.0279 (12)0.0150 (8)0.0172 (10)0.0034 (7)0.0064 (10)0.0036 (8)
Br1—C201.905 (3)C11—C131.419 (4)
C1—C31.384 (3)C12—N31.285 (3)
C1—C21.396 (3)C12—C131.459 (3)
C1—H10.95C12—H120.95
C2—C61.395 (3)C14—N31.470 (3)
C2—N21.435 (3)C14—C151.524 (3)
C3—C41.376 (4)C14—C171.524 (4)
C3—H30.95C14—H141.0
C4—C51.397 (4)C15—H15A0.98
C4—H40.95C15—H15B0.98
C5—C61.386 (3)C15—H15C0.98
C5—H50.95C16—C211.383 (4)
C6—H60.95C16—C171.389 (3)
C7—C81.388 (3)C16—H160.95
C7—C131.390 (3)C17—C181.390 (4)
C7—H70.95C18—C191.389 (4)
C8—C91.395 (3)C18—H180.95
C8—N11.433 (3)C19—C201.375 (3)
C9—C101.380 (3)C19—H190.95
C9—H90.95C20—C211.386 (4)
C10—C111.389 (3)C21—H210.95
C10—H100.95N1—N21.256 (3)
C11—O11.350 (3)O1—H1A0.84
C3—C1—C2119.6 (2)C7—C13—C12120.1 (2)
C3—C1—H1120.2C11—C13—C12121.1 (2)
C2—C1—H1120.2N3—C14—C15108.0 (2)
C6—C2—C1120.1 (2)N3—C14—C17109.8 (2)
C6—C2—N2123.5 (2)C15—C14—C17112.67 (19)
C1—C2—N2116.4 (2)N3—C14—H14108.8
C4—C3—C1120.6 (3)C15—C14—H14108.8
C4—C3—H3119.7C17—C14—H14108.8
C1—C3—H3119.7C14—C15—H15A109.5
C3—C4—C5120.1 (2)C14—C15—H15B109.5
C3—C4—H4120.0H15A—C15—H15B109.5
C5—C4—H4120.0C14—C15—H15C109.5
C6—C5—C4120.0 (3)H15A—C15—H15C109.5
C6—C5—H5120.0H15B—C15—H15C109.5
C4—C5—H5120.0C21—C16—C17122.5 (3)
C5—C6—C2119.6 (2)C21—C16—H16118.7
C5—C6—H6120.2C17—C16—H16118.7
C2—C6—H6120.2C16—C17—C18117.4 (2)
C8—C7—C13121.1 (2)C16—C17—C14119.9 (2)
C8—C7—H7119.4C18—C17—C14122.6 (2)
C13—C7—H7119.4C19—C18—C17121.3 (2)
C7—C8—C9119.4 (2)C19—C18—H18119.3
C7—C8—N1124.7 (2)C17—C18—H18119.3
C9—C8—N1115.9 (2)C20—C19—C18119.3 (3)
C10—C9—C8120.4 (2)C20—C19—H19120.3
C10—C9—H9119.8C18—C19—H19120.3
C8—C9—H9119.8C19—C20—C21121.2 (3)
C9—C10—C11120.5 (2)C19—C20—Br1118.8 (2)
C9—C10—H10119.8C21—C20—Br1120.02 (19)
C11—C10—H10119.8C16—C21—C20118.2 (2)
O1—C11—C10119.0 (2)C16—C21—H21120.9
O1—C11—C13121.3 (2)C20—C21—H21120.9
C10—C11—C13119.7 (2)N2—N1—C8114.3 (2)
N3—C12—C13121.0 (2)N1—N2—C2113.1 (2)
N3—C12—H12119.5C12—N3—C14118.3 (2)
C13—C12—H12119.5C11—O1—H1A109.5
C7—C13—C11118.8 (2)
C3—C1—C2—C60.8 (4)C21—C16—C17—C180.3 (4)
C3—C1—C2—N2178.1 (2)C21—C16—C17—C14178.9 (2)
C2—C1—C3—C4−1.0 (4)N3—C14—C17—C16176.7 (2)
C1—C3—C4—C51.2 (4)C15—C14—C17—C1656.2 (3)
C3—C4—C5—C6−1.1 (4)N3—C14—C17—C18−4.8 (3)
C4—C5—C6—C20.9 (4)C15—C14—C17—C18−125.3 (3)
C1—C2—C6—C5−0.8 (4)C16—C17—C18—C19−0.5 (4)
N2—C2—C6—C5−177.9 (2)C14—C17—C18—C19−179.0 (2)
C13—C7—C8—C92.8 (4)C17—C18—C19—C20−0.4 (4)
C13—C7—C8—N1−176.2 (2)C18—C19—C20—C211.3 (4)
C7—C8—C9—C10−3.3 (4)C18—C19—C20—Br1−177.8 (2)
N1—C8—C9—C10175.8 (2)C17—C16—C21—C200.6 (4)
C8—C9—C10—C111.4 (4)C19—C20—C21—C16−1.5 (4)
C9—C10—C11—O1−179.2 (2)Br1—C20—C21—C16177.69 (19)
C9—C10—C11—C131.1 (4)C7—C8—N1—N211.8 (4)
C8—C7—C13—C11−0.3 (4)C9—C8—N1—N2−167.2 (2)
C8—C7—C13—C12177.8 (2)C8—N1—N2—C2177.17 (19)
O1—C11—C13—C7178.7 (2)C6—C2—N2—N1−16.5 (3)
C10—C11—C13—C7−1.6 (4)C1—C2—N2—N1166.3 (2)
O1—C11—C13—C120.5 (4)C13—C12—N3—C14178.6 (2)
C10—C11—C13—C12−179.8 (2)C15—C14—N3—C12−113.7 (3)
N3—C12—C13—C7−177.4 (2)C17—C14—N3—C12123.1 (3)
N3—C12—C13—C110.7 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N30.841.842.585 (3)148
C12—H12···Cg1i0.952.803.399 (3)122
C10—H10···Cg1ii0.952.743.415 (3)128
C6—H6···Cg2iii0.952.753.423 (3)128
Table 1

Hydrogen-bond geometry (, )

Cg1 and Cg2 are centroids of C1C6 and C7C11/C13 rings, respectively.

DHA DHHA D A DHA
O1H1AN30.841.842.585(3)148
C12H12Cg1i 0.952.803.399(3)122
C10H10Cg1ii 0.952.743.415(3)128
C6H6Cg2iii 0.952.753.423(3)128

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

Review 1.  Photochromism and thermochromism of Schiff bases in the solid state: structural aspects.

Authors:  Eugene Hadjoudis; Irene M Mavridis
Journal:  Chem Soc Rev       Date:  2004-11-04       Impact factor: 54.564

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Racemic 3,5-dichloro-2-[[(1-phenylethyl)imino]methyl]phenol.

Authors:  Takashiro Akitsu; Yuiri Takeuchi; Yasuaki Einaga
Journal:  Acta Crystallogr C       Date:  2004-10-22       Impact factor: 1.172

4.  4-Phenyl-diazenyl-2-[(R)-(1-phenyl-ethyl)imino-meth-yl]phenol.

Authors:  Yoshikazu Aritake; Yoshimasa Watanabe; Takashiro Akitsu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-06

5.  A chiral photochromic Schiff base: (R)-4-meth-oxy-2-[(1-phenyl-ethyl)imino-meth-yl]phenol.

Authors:  Yukie Miura; Yoshikazu Aritake; Takashiro Akitsu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09

6.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

7.  Use of intensity quotients and differences in absolute structure refinement.

Authors:  Simon Parsons; Howard D Flack; Trixie Wagner
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2013-05-17
  7 in total

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