Literature DB >> 26594576

Crystal structure of di-cyclo-hexyl-ammonium nitrate(V).

Tomasz Rojek1, Ewa Matczak-Jon1.   

Abstract

In the title mol-ecular salt, C12H24N(+)·NO3 (-), the cyclohexyl rings adopt chair conformations with the exocyclic C-N bonds in equatorial orientations. In the crystal, a bifurcated N-H⋯(O,O) hydrogen bond links the cation to the anion; the ion pairs are linked via C-H⋯O hydrogen bonds, forming layers in the ac plane.

Entities:  

Keywords:  crystal structure; di­cyclo­hexyl­ammonium salts; hydrogen bonding; nitrate(V) salts

Year:  2015        PMID: 26594576      PMCID: PMC4645052          DOI: 10.1107/S2056989015019386

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the crystal structure of di­cyclo­hexyl­ammonium nitrate(III), see: Golobič et al. (1999 ▸). For other crystal structures of di­cyclo­hexyl­ammonium salts, see: Ng (1995 ▸); Bi et al. (2002 ▸); Lo & Ng (2008 ▸); Khawar Rauf et al. (2008 ▸); Selvakumaran et al. (2011 ▸); Ndoye et al. (2014 ▸). For crystal structures of carboxyl­ate salts with the di­cyclo­hexyl­ammonium cation belonging to the low mol­ecular weight gelators (LMWGs) class of compounds and exhibiting gelling properties, see: Trivedi et al. (2004 ▸, 2005 ▸); Sahoo & Dastidar (2012 ▸); Rojek et al. (2015 ▸).

Experimental

Crystal data

C12H24NNO3 M = 244.33 Orthorhombic, a = 8.436 (2) Å b = 18.682 (5) Å c = 8.427 (3) Å V = 1328.1 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.45 × 0.41 × 0.36 mm

Data collection

Kuma KM-4 difractometer with a CCD camera diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▸) T min = 0.962, T max = 0.969 9001 measured reflections 1759 independent reflections 1699 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.089 S = 1.09 1759 reflections 162 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.19 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: DIAMOND (Brandenburg, 1999 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015019386/su5222sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015019386/su5222Isup2.hkl Supporting information file. DOI: 10.1107/S2056989015019386/su5222Isup3.txt Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015019386/su5222Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015019386/su5222fig1.tif The asymmetric unit of the title mol­ecular salt, showing the atom-numbering scheme and the symmetry-independent hydrogen bonds (orange and light-blue dashed lines; see Table 1). Displacement ellipsoids are drawn at the 50% probability level. Click here for additional data file. b ac . DOI: 10.1107/S2056989015019386/su5222fig2.tif A view along the b axis of the crystal packing of the title mol­ecular salt, showing the hydrogen-bonded chains assembled into a layer in the ac plane. Hydrogen bonds are drawn as yellow and light-blue dashed lines (see Table 1). H atoms on C atoms of the cyclo­hexane rings not involved in hydrogen bonds have been omitted for clarity. CCDC reference: 1431025 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H24N+·NO3F(000) = 536
Mr = 244.33Dx = 1.222 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 6847 reflections
a = 8.436 (2) Åθ = 3–29°
b = 18.682 (5) ŵ = 0.09 mm1
c = 8.427 (3) ÅT = 100 K
V = 1328.1 (7) Å3Block, colorless
Z = 40.45 × 0.41 × 0.36 mm
Kuma KM-4 difractometer with a CCD camera diffractometer1699 reflections with I > 2σ(I)
Radiation source: normal focus sealed tubeRint = 0.035
ω scansθmax = 28.7°, θmin = 3.3°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)h = −9→11
Tmin = 0.962, Tmax = 0.969k = −24→22
9001 measured reflectionsl = −11→11
1759 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.051P)2 + 0.1971P] where P = (Fo2 + 2Fc2)/3
1759 reflections(Δ/σ)max < 0.001
162 parametersΔρmax = 0.21 e Å3
1 restraintΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.67955 (15)0.52358 (7)0.34329 (17)0.0172 (3)
H1N0.575 (3)0.5334 (10)0.348 (3)0.022 (5)*
H2N0.703 (2)0.5150 (11)0.245 (3)0.020 (5)*
C110.76844 (18)0.58933 (8)0.39662 (19)0.0174 (3)
H110.88440.58120.38020.021*
C210.7391 (2)0.60372 (9)0.5718 (2)0.0209 (3)
H21A0.77730.56260.63540.025*
H21B0.62390.60910.59090.025*
C310.8252 (2)0.67195 (8)0.6241 (2)0.0236 (3)
H31A0.79940.68220.73650.028*
H31B0.94110.66440.61630.028*
C410.7782 (2)0.73593 (8)0.5221 (2)0.0249 (3)
H41A0.84150.77820.55370.030*
H41B0.66490.74720.54000.030*
C510.8053 (2)0.72023 (9)0.3456 (2)0.0256 (3)
H51A0.76810.76130.28150.031*
H51B0.92020.71400.32560.031*
C610.71676 (19)0.65265 (8)0.2950 (2)0.0213 (3)
H61A0.60120.66020.30680.026*
H61B0.73900.64240.18200.026*
C120.71252 (17)0.45456 (8)0.4304 (2)0.0173 (3)
H120.67770.46010.54320.021*
C220.61395 (18)0.39582 (8)0.3534 (2)0.0202 (3)
H22A0.64470.39060.24060.024*
H22B0.50030.40890.35750.024*
C320.64019 (18)0.32501 (8)0.4401 (2)0.0224 (3)
H32A0.60100.32910.55040.027*
H32B0.57910.28670.38660.027*
C420.81560 (18)0.30512 (8)0.4419 (2)0.0225 (3)
H42A0.83040.26060.50400.027*
H42B0.85170.29580.33200.027*
C520.91573 (19)0.36473 (8)0.5142 (2)0.0231 (3)
H52A1.02920.35160.50730.028*
H52B0.88820.37010.62780.028*
C620.88884 (18)0.43628 (8)0.4286 (2)0.0206 (3)
H62A0.94960.47460.48220.025*
H62B0.92660.43270.31760.025*
N20.27878 (15)0.55034 (7)0.44418 (19)0.0209 (3)
O10.15367 (14)0.57836 (7)0.48831 (17)0.0325 (3)
O20.33397 (19)0.49638 (8)0.51433 (18)0.0398 (4)
O30.35579 (15)0.57519 (7)0.32934 (17)0.0318 (3)
U11U22U33U12U13U23
N10.0173 (6)0.0172 (6)0.0172 (7)0.0010 (5)−0.0018 (5)−0.0027 (5)
C110.0183 (7)0.0165 (7)0.0176 (7)0.0002 (5)−0.0001 (6)−0.0019 (5)
C210.0260 (7)0.0202 (7)0.0165 (7)−0.0022 (6)−0.0009 (6)−0.0014 (6)
C310.0288 (8)0.0199 (7)0.0220 (8)0.0000 (6)−0.0035 (6)−0.0047 (6)
C410.0274 (8)0.0179 (7)0.0293 (8)0.0012 (6)−0.0015 (7)−0.0026 (7)
C510.0314 (8)0.0209 (7)0.0245 (8)−0.0029 (6)0.0017 (7)0.0025 (7)
C610.0256 (8)0.0199 (7)0.0184 (7)0.0001 (6)−0.0003 (6)0.0021 (6)
C120.0170 (6)0.0162 (6)0.0187 (7)0.0009 (5)−0.0004 (6)−0.0003 (6)
C220.0173 (7)0.0189 (7)0.0242 (8)−0.0007 (5)−0.0013 (6)−0.0025 (6)
C320.0225 (7)0.0187 (7)0.0261 (8)−0.0011 (5)0.0034 (7)−0.0007 (6)
C420.0236 (7)0.0188 (7)0.0252 (8)0.0017 (6)0.0029 (7)−0.0004 (7)
C520.0212 (7)0.0227 (7)0.0253 (7)0.0033 (6)−0.0045 (6)0.0005 (7)
C620.0178 (7)0.0196 (7)0.0243 (8)0.0002 (5)−0.0031 (6)−0.0009 (6)
N20.0202 (6)0.0229 (6)0.0197 (6)−0.0009 (5)−0.0012 (5)−0.0013 (5)
O10.0197 (6)0.0370 (7)0.0409 (8)0.0041 (5)0.0034 (5)−0.0079 (6)
O20.0594 (9)0.0360 (7)0.0239 (6)0.0236 (6)0.0088 (7)0.0071 (6)
O30.0296 (6)0.0394 (7)0.0263 (7)0.0000 (5)0.0050 (5)0.0082 (6)
N1—C111.5077 (19)C12—C221.522 (2)
N1—C121.510 (2)C12—C621.526 (2)
N1—H1N0.91 (2)C12—H121.0000
N1—H2N0.86 (2)C22—C321.527 (2)
C11—C211.521 (2)C22—H22A0.9900
C11—C611.524 (2)C22—H22B0.9900
C11—H111.0000C32—C421.526 (2)
C21—C311.532 (2)C32—H32A0.9900
C21—H21A0.9900C32—H32B0.9900
C21—H21B0.9900C42—C521.525 (2)
C31—C411.525 (2)C42—H42A0.9900
C31—H31A0.9900C42—H42B0.9900
C31—H31B0.9900C52—C621.536 (2)
C41—C511.533 (3)C52—H52A0.9900
C41—H41A0.9900C52—H52B0.9900
C41—H41B0.9900C62—H62A0.9900
C51—C611.528 (2)C62—H62B0.9900
C51—H51A0.9900N2—O11.2353 (18)
C51—H51B0.9900N2—O31.255 (2)
C61—H61A0.9900N2—O21.258 (2)
C61—H61B0.9900
C11—N1—C12117.34 (12)H61A—C61—H61B108.1
C11—N1—H1N107.9 (13)N1—C12—C22107.92 (12)
C12—N1—H1N109.3 (13)N1—C12—C62111.45 (12)
C11—N1—H2N109.0 (14)C22—C12—C62111.51 (12)
C12—N1—H2N105.4 (14)N1—C12—H12108.6
H1N—N1—H2N108 (2)C22—C12—H12108.6
N1—C11—C21110.62 (13)C62—C12—H12108.6
N1—C11—C61108.83 (13)C12—C22—C32109.96 (13)
C21—C11—C61111.20 (13)C12—C22—H22A109.7
N1—C11—H11108.7C32—C22—H22A109.7
C21—C11—H11108.7C12—C22—H22B109.7
C61—C11—H11108.7C32—C22—H22B109.7
C11—C21—C31110.42 (14)H22A—C22—H22B108.2
C11—C21—H21A109.6C42—C32—C22110.87 (13)
C31—C21—H21A109.6C42—C32—H32A109.5
C11—C21—H21B109.6C22—C32—H32A109.5
C31—C21—H21B109.6C42—C32—H32B109.5
H21A—C21—H21B108.1C22—C32—H32B109.5
C41—C31—C21111.49 (14)H32A—C32—H32B108.1
C41—C31—H31A109.3C52—C42—C32111.30 (13)
C21—C31—H31A109.3C52—C42—H42A109.4
C41—C31—H31B109.3C32—C42—H42A109.4
C21—C31—H31B109.3C52—C42—H42B109.4
H31A—C31—H31B108.0C32—C42—H42B109.4
C31—C41—C51110.99 (13)H42A—C42—H42B108.0
C31—C41—H41A109.4C42—C52—C62111.46 (14)
C51—C41—H41A109.4C42—C52—H52A109.3
C31—C41—H41B109.4C62—C52—H52A109.3
C51—C41—H41B109.4C42—C52—H52B109.3
H41A—C41—H41B108.0C62—C52—H52B109.3
C61—C51—C41110.81 (14)H52A—C52—H52B108.0
C61—C51—H51A109.5C12—C62—C52109.50 (13)
C41—C51—H51A109.5C12—C62—H62A109.8
C61—C51—H51B109.5C52—C62—H62A109.8
C41—C51—H51B109.5C12—C62—H62B109.8
H51A—C51—H51B108.1C52—C62—H62B109.8
C11—C61—C51110.18 (13)H62A—C62—H62B108.2
C11—C61—H61A109.6O1—N2—O3121.19 (15)
C51—C61—H61A109.6O1—N2—O2120.95 (16)
C11—C61—H61B109.6O3—N2—O2117.86 (14)
C51—C61—H61B109.6
C12—N1—C11—C21−56.99 (17)C11—N1—C12—C22−178.34 (13)
C12—N1—C11—C61−179.43 (13)C11—N1—C12—C62−55.58 (18)
N1—C11—C21—C31−178.14 (13)N1—C12—C22—C32−178.66 (12)
C61—C11—C21—C31−57.10 (18)C62—C12—C22—C3258.62 (18)
C11—C21—C31—C4155.47 (18)C12—C22—C32—C42−56.86 (18)
C21—C31—C41—C51−55.0 (2)C22—C32—C42—C5255.7 (2)
C31—C41—C51—C6155.81 (19)C32—C42—C52—C62−55.4 (2)
N1—C11—C61—C51−179.74 (13)N1—C12—C62—C52−178.37 (13)
C21—C11—C61—C5158.16 (18)C22—C12—C62—C52−57.70 (18)
C41—C51—C61—C11−57.12 (18)C42—C52—C62—C1255.69 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O20.91 (2)2.56 (2)3.292 (2)138.2 (17)
N1—H1N···O30.91 (2)2.01 (2)2.8988 (19)166.7 (19)
N1—H2N···O2i0.86 (2)1.98 (2)2.799 (2)157.6 (19)
C11—H11···O1ii1.002.453.347 (2)149
C12—H12···O3iii1.002.523.456 (3)156
C22—H22B···O20.992.533.309 (2)136
C62—H62A···O1ii0.992.593.506 (2)153
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1NO20.91(2)2.56(2)3.292(2)138.2(17)
N1H1NO30.91(2)2.01(2)2.8988(19)166.7(19)
N1H2NO2i 0.86(2)1.98(2)2.799(2)157.6(19)
C11H11O1ii 1.002.453.347(2)149
C12H12O3iii 1.002.523.456(3)156
C22H22BO20.992.533.309(2)136
C62H62AO1ii 0.992.593.506(2)153

Symmetry codes: (i) ; (ii) ; (iii) .

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