| Literature DB >> 26594523 |
Wayland E Noland1, Christopher D Brown1, Amanda M Bisel1, Andrew K Schneerer1, Kenneth J Tritch1.
Abstract
The title compound, C23H19NO2S2, was obtained as an unexpected regioisomer from an attempted synthesis of an inter-mediate for a substituent-effect study on ergot alkaloids. This is the first report of a 1H-indole mono-thio-ating at the 2- and 3-positions to give a 3H-indole. In the crystal, the acid H atom is twisted roughly 180° from the typical carb-oxy conformation and forms centrosymmetric O-H⋯N hydrogen-bonded dimers with the indole N atom of an inversion-related mol-ecule. Together with a weak C-H⋯O hydrogen bond involving the carbonyl O atom, chains are formed along [100].Entities:
Keywords: 3H-indole; O—H⋯N hydrogen bond; Uhle’s ketone; crystal structure; ergot; thioation
Year: 2015 PMID: 26594523 PMCID: PMC4645081 DOI: 10.1107/S2056989015020241
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The ergot alkaloid skeleton, (2), Uhle’s ketone, (3), the intended product, (4), and the synthesis of the title compound (bottom row).
Figure 2The molecular structure of the title compound, showing the atom labeling. Displacement ellipsoids are drawn at the 50% probability level.
Figure 3A view along [04] of the O1—H1O⋯N1 hydrogen-bonded inversion dimer. The C12–C17 ring has been omitted for clarity.
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| O1H1N1i | 0.84 | 1.96 | 2.7622(18) | 159 |
| C3H3 | 0.99 | 2.57 | 3.356(2) | 136 |
Symmetry codes: (i) ; (ii) .
Figure 4A view along [04] of the C3—H3A⋯O2 hydrogen-bonded inversion dimer.
Figure 5The three 2-thio-3H-indoles found in the Cambridge Structural Database (CSD; Groom & Allen, 2014 ▸).
Experimental details
| Crystal data | |
| Chemical formula | C23H19NO2S2 |
|
| 405.51 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 173 |
|
| 9.6498(12), 9.8610(12), 10.8812(13) |
| , , () | 87.626(1), 79.331(1), 76.022(1) |
|
| 987.4(2) |
|
| 2 |
| Radiation type | Mo |
| (mm1) | 0.29 |
| Crystal size (mm) | 0.23 0.12 0.10 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.698, 0.746 |
| No. of measured, independent and observed [ | 11689, 4499, 3396 |
|
| 0.032 |
| (sin /)max (1) | 0.651 |
| Refinement | |
|
| 0.038, 0.092, 1.06 |
| No. of reflections | 4499 |
| No. of parameters | 254 |
| H-atom treatment | H-atom parameters constrained |
| max, min (e 3) | 0.27, 0.26 |
Computer programs: APEX2 and SAINT (Bruker, 2007 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸), enCIFer (Allen et al., 2004 ▸) and publCIF (Westrip, 2010 ▸).
| C23H19NO2S2 | |
| Triclinic, | Melting point: 444 K |
| Mo | |
| Cell parameters from 2977 reflections | |
| θ = 2.7–27.3° | |
| α = 87.626 (1)° | µ = 0.29 mm−1 |
| β = 79.331 (1)° | |
| γ = 76.022 (1)° | Block, colourless |
| 0.23 × 0.12 × 0.10 mm | |
| Bruker APEXII CCD diffractometer | 3396 reflections with |
| Radiation source: sealed tube | |
| φ and ω scans | θmax = 27.6°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 11689 measured reflections | |
| 4499 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 4499 reflections | Δρmax = 0.27 e Å−3 |
| 254 parameters | Δρmin = −0.26 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| S1 | 0.62197 (5) | 0.45034 (5) | 0.16673 (4) | 0.03266 (13) | |
| S2 | 0.92472 (5) | 0.19331 (5) | 0.20164 (4) | 0.03283 (13) | |
| O1 | 0.74866 (13) | 0.71335 (13) | 0.58120 (12) | 0.0338 (3) | |
| H1 | 0.6688 | 0.6928 | 0.6075 | 0.051* | |
| O2 | 0.93299 (13) | 0.65100 (13) | 0.42699 (12) | 0.0370 (3) | |
| N1 | 0.54112 (14) | 0.29215 (14) | 0.36472 (13) | 0.0251 (3) | |
| C1 | 0.82262 (18) | 0.62905 (17) | 0.48697 (16) | 0.0262 (4) | |
| C2 | 0.76080 (18) | 0.50855 (18) | 0.46281 (16) | 0.0289 (4) | |
| H2A | 0.6624 | 0.5453 | 0.4433 | 0.035* | |
| H2B | 0.7514 | 0.4515 | 0.5395 | 0.035* | |
| C3 | 0.85486 (18) | 0.41595 (17) | 0.35510 (16) | 0.0279 (4) | |
| H3A | 0.9532 | 0.3789 | 0.3747 | 0.033* | |
| H3B | 0.8644 | 0.4731 | 0.2784 | 0.033* | |
| C4 | 0.79162 (17) | 0.29341 (17) | 0.33029 (15) | 0.0258 (4) | |
| C5 | 0.75579 (18) | 0.20556 (17) | 0.44228 (15) | 0.0254 (4) | |
| C6 | 0.84042 (19) | 0.13254 (18) | 0.52368 (17) | 0.0310 (4) | |
| H6 | 0.9401 | 0.1332 | 0.5147 | 0.037* | |
| C7 | 0.7755 (2) | 0.05780 (18) | 0.61945 (17) | 0.0350 (4) | |
| H7 | 0.8320 | 0.0052 | 0.6757 | 0.042* | |
| C8 | 0.6292 (2) | 0.05935 (18) | 0.63364 (17) | 0.0350 (4) | |
| H8 | 0.5872 | 0.0073 | 0.6994 | 0.042* | |
| C9 | 0.54286 (19) | 0.13564 (17) | 0.55330 (16) | 0.0295 (4) | |
| H9 | 0.4424 | 0.1380 | 0.5637 | 0.035* | |
| C10 | 0.60945 (18) | 0.20787 (16) | 0.45758 (15) | 0.0251 (4) | |
| C11 | 0.64132 (17) | 0.34029 (17) | 0.29370 (15) | 0.0250 (4) | |
| C12 | 0.43242 (19) | 0.48511 (19) | 0.16692 (15) | 0.0295 (4) | |
| C13 | 0.3474 (2) | 0.6178 (2) | 0.20041 (17) | 0.0363 (4) | |
| H13 | 0.3887 | 0.6865 | 0.2283 | 0.044* | |
| C14 | 0.2017 (2) | 0.6485 (2) | 0.19258 (18) | 0.0432 (5) | |
| H14 | 0.1427 | 0.7391 | 0.2152 | 0.052* | |
| C15 | 0.1417 (2) | 0.5497 (2) | 0.15248 (18) | 0.0442 (5) | |
| H15 | 0.0420 | 0.5726 | 0.1459 | 0.053* | |
| C16 | 0.2255 (2) | 0.4172 (2) | 0.12167 (18) | 0.0422 (5) | |
| H16 | 0.1828 | 0.3482 | 0.0962 | 0.051* | |
| C17 | 0.3717 (2) | 0.3847 (2) | 0.12777 (17) | 0.0358 (4) | |
| H17 | 0.4301 | 0.2939 | 0.1052 | 0.043* | |
| C18 | 0.83442 (18) | 0.06781 (19) | 0.16376 (16) | 0.0307 (4) | |
| C19 | 0.7666 (2) | 0.0890 (2) | 0.06019 (18) | 0.0444 (5) | |
| H19 | 0.7669 | 0.1712 | 0.0115 | 0.053* | |
| C20 | 0.6988 (3) | −0.0091 (3) | 0.0277 (2) | 0.0563 (6) | |
| H20 | 0.6528 | 0.0057 | −0.0433 | 0.068* | |
| C21 | 0.6979 (2) | −0.1282 (2) | 0.0980 (2) | 0.0506 (6) | |
| H21 | 0.6496 | −0.1947 | 0.0764 | 0.061* | |
| C22 | 0.7667 (2) | −0.1509 (2) | 0.19934 (19) | 0.0444 (5) | |
| H22 | 0.7674 | −0.2341 | 0.2467 | 0.053* | |
| C23 | 0.8348 (2) | −0.05393 (19) | 0.23299 (17) | 0.0355 (4) | |
| H23 | 0.8820 | −0.0703 | 0.3034 | 0.043* |
| S1 | 0.0282 (2) | 0.0393 (3) | 0.0309 (2) | −0.0096 (2) | −0.00598 (19) | 0.0068 (2) |
| S2 | 0.0249 (2) | 0.0364 (3) | 0.0345 (3) | −0.00567 (19) | 0.00119 (19) | −0.0076 (2) |
| O1 | 0.0281 (7) | 0.0349 (7) | 0.0405 (7) | −0.0121 (6) | −0.0035 (6) | −0.0088 (6) |
| O2 | 0.0303 (7) | 0.0405 (8) | 0.0426 (8) | −0.0175 (6) | 0.0000 (6) | −0.0020 (6) |
| N1 | 0.0236 (7) | 0.0249 (7) | 0.0271 (7) | −0.0060 (6) | −0.0048 (6) | −0.0018 (6) |
| C1 | 0.0255 (9) | 0.0273 (9) | 0.0282 (9) | −0.0072 (7) | −0.0101 (7) | 0.0035 (7) |
| C2 | 0.0246 (9) | 0.0300 (9) | 0.0326 (9) | −0.0104 (7) | −0.0011 (7) | −0.0025 (7) |
| C3 | 0.0223 (8) | 0.0299 (9) | 0.0325 (9) | −0.0089 (7) | −0.0038 (7) | −0.0017 (7) |
| C4 | 0.0208 (8) | 0.0271 (9) | 0.0279 (9) | −0.0035 (7) | −0.0027 (7) | −0.0034 (7) |
| C5 | 0.0262 (9) | 0.0216 (8) | 0.0274 (9) | −0.0041 (7) | −0.0033 (7) | −0.0047 (7) |
| C6 | 0.0290 (9) | 0.0268 (9) | 0.0361 (10) | −0.0031 (7) | −0.0075 (8) | −0.0026 (8) |
| C7 | 0.0397 (11) | 0.0265 (9) | 0.0368 (11) | 0.0001 (8) | −0.0127 (8) | 0.0012 (8) |
| C8 | 0.0449 (11) | 0.0254 (9) | 0.0337 (10) | −0.0089 (8) | −0.0050 (9) | 0.0037 (8) |
| C9 | 0.0287 (9) | 0.0239 (9) | 0.0362 (10) | −0.0082 (7) | −0.0042 (8) | −0.0006 (7) |
| C10 | 0.0273 (9) | 0.0212 (8) | 0.0265 (9) | −0.0048 (7) | −0.0046 (7) | −0.0024 (7) |
| C11 | 0.0241 (8) | 0.0231 (8) | 0.0270 (9) | −0.0040 (7) | −0.0036 (7) | −0.0065 (7) |
| C12 | 0.0291 (9) | 0.0360 (10) | 0.0223 (9) | −0.0058 (8) | −0.0054 (7) | 0.0048 (7) |
| C13 | 0.0371 (10) | 0.0378 (11) | 0.0320 (10) | −0.0065 (8) | −0.0043 (8) | 0.0006 (8) |
| C14 | 0.0363 (11) | 0.0459 (12) | 0.0380 (11) | 0.0020 (9) | 0.0014 (9) | 0.0029 (9) |
| C15 | 0.0280 (10) | 0.0677 (15) | 0.0333 (11) | −0.0099 (10) | −0.0007 (8) | 0.0100 (10) |
| C16 | 0.0385 (11) | 0.0565 (13) | 0.0360 (11) | −0.0199 (10) | −0.0072 (9) | 0.0033 (10) |
| C17 | 0.0376 (11) | 0.0377 (11) | 0.0327 (10) | −0.0090 (9) | −0.0075 (8) | 0.0004 (8) |
| C18 | 0.0264 (9) | 0.0330 (10) | 0.0291 (9) | −0.0006 (7) | −0.0022 (7) | −0.0085 (8) |
| C19 | 0.0580 (14) | 0.0411 (12) | 0.0346 (11) | −0.0078 (10) | −0.0146 (10) | −0.0018 (9) |
| C20 | 0.0702 (16) | 0.0599 (15) | 0.0451 (13) | −0.0130 (12) | −0.0271 (12) | −0.0136 (11) |
| C21 | 0.0531 (14) | 0.0479 (13) | 0.0542 (14) | −0.0160 (11) | −0.0092 (11) | −0.0176 (11) |
| C22 | 0.0538 (13) | 0.0347 (11) | 0.0425 (12) | −0.0113 (10) | −0.0007 (10) | −0.0057 (9) |
| C23 | 0.0374 (10) | 0.0328 (10) | 0.0335 (10) | −0.0013 (8) | −0.0072 (8) | −0.0050 (8) |
| S1—C11 | 1.7305 (17) | C8—H8 | 0.9500 |
| S1—C12 | 1.7773 (18) | C9—C10 | 1.385 (2) |
| S2—C18 | 1.7767 (18) | C9—H9 | 0.9500 |
| S2—C4 | 1.8493 (16) | C12—C17 | 1.383 (2) |
| O1—C1 | 1.328 (2) | C12—C13 | 1.389 (3) |
| O1—H1 | 0.8400 | C13—C14 | 1.382 (3) |
| O2—C1 | 1.2040 (19) | C13—H13 | 0.9500 |
| N1—C11 | 1.293 (2) | C14—C15 | 1.370 (3) |
| N1—C10 | 1.435 (2) | C14—H14 | 0.9500 |
| C1—C2 | 1.504 (2) | C15—C16 | 1.378 (3) |
| C2—C3 | 1.525 (2) | C15—H15 | 0.9500 |
| C2—H2A | 0.9900 | C16—C17 | 1.382 (3) |
| C2—H2B | 0.9900 | C16—H16 | 0.9500 |
| C3—C4 | 1.533 (2) | C17—H17 | 0.9500 |
| C3—H3A | 0.9900 | C18—C19 | 1.389 (3) |
| C3—H3B | 0.9900 | C18—C23 | 1.390 (2) |
| C4—C5 | 1.502 (2) | C19—C20 | 1.382 (3) |
| C4—C11 | 1.533 (2) | C19—H19 | 0.9500 |
| C5—C6 | 1.379 (2) | C20—C21 | 1.375 (3) |
| C5—C10 | 1.386 (2) | C20—H20 | 0.9500 |
| C6—C7 | 1.392 (2) | C21—C22 | 1.374 (3) |
| C6—H6 | 0.9500 | C21—H21 | 0.9500 |
| C7—C8 | 1.388 (3) | C22—C23 | 1.379 (3) |
| C7—H7 | 0.9500 | C22—H22 | 0.9500 |
| C8—C9 | 1.392 (2) | C23—H23 | 0.9500 |
| C11—S1—C12 | 102.47 (8) | C9—C10—N1 | 126.35 (15) |
| C18—S2—C4 | 102.65 (8) | C5—C10—N1 | 111.96 (14) |
| C1—O1—H1 | 109.5 | N1—C11—C4 | 114.43 (14) |
| C11—N1—C10 | 106.38 (14) | N1—C11—S1 | 127.16 (13) |
| O2—C1—O1 | 119.92 (15) | C4—C11—S1 | 118.40 (12) |
| O2—C1—C2 | 123.81 (16) | C17—C12—C13 | 120.40 (17) |
| O1—C1—C2 | 116.27 (14) | C17—C12—S1 | 120.78 (14) |
| C1—C2—C3 | 112.44 (13) | C13—C12—S1 | 118.72 (14) |
| C1—C2—H2A | 109.1 | C14—C13—C12 | 119.08 (19) |
| C3—C2—H2A | 109.1 | C14—C13—H13 | 120.5 |
| C1—C2—H2B | 109.1 | C12—C13—H13 | 120.5 |
| C3—C2—H2B | 109.1 | C15—C14—C13 | 120.61 (19) |
| H2A—C2—H2B | 107.8 | C15—C14—H14 | 119.7 |
| C2—C3—C4 | 112.42 (13) | C13—C14—H14 | 119.7 |
| C2—C3—H3A | 109.1 | C14—C15—C16 | 120.29 (19) |
| C4—C3—H3A | 109.1 | C14—C15—H15 | 119.9 |
| C2—C3—H3B | 109.1 | C16—C15—H15 | 119.9 |
| C4—C3—H3B | 109.1 | C15—C16—C17 | 119.99 (19) |
| H3A—C3—H3B | 107.9 | C15—C16—H16 | 120.0 |
| C5—C4—C3 | 115.35 (14) | C17—C16—H16 | 120.0 |
| C5—C4—C11 | 99.58 (13) | C16—C17—C12 | 119.61 (18) |
| C3—C4—C11 | 113.08 (13) | C16—C17—H17 | 120.2 |
| C5—C4—S2 | 113.36 (11) | C12—C17—H17 | 120.2 |
| C3—C4—S2 | 104.98 (11) | C19—C18—C23 | 119.20 (18) |
| C11—C4—S2 | 110.69 (11) | C19—C18—S2 | 119.45 (15) |
| C6—C5—C10 | 120.95 (16) | C23—C18—S2 | 121.31 (14) |
| C6—C5—C4 | 131.39 (15) | C20—C19—C18 | 120.20 (19) |
| C10—C5—C4 | 107.65 (14) | C20—C19—H19 | 119.9 |
| C5—C6—C7 | 118.04 (17) | C18—C19—H19 | 119.9 |
| C5—C6—H6 | 121.0 | C21—C20—C19 | 120.1 (2) |
| C7—C6—H6 | 121.0 | C21—C20—H20 | 119.9 |
| C8—C7—C6 | 120.76 (17) | C19—C20—H20 | 119.9 |
| C8—C7—H7 | 119.6 | C22—C21—C20 | 119.9 (2) |
| C6—C7—H7 | 119.6 | C22—C21—H21 | 120.0 |
| C7—C8—C9 | 121.26 (17) | C20—C21—H21 | 120.0 |
| C7—C8—H8 | 119.4 | C21—C22—C23 | 120.6 (2) |
| C9—C8—H8 | 119.4 | C21—C22—H22 | 119.7 |
| C10—C9—C8 | 117.26 (16) | C23—C22—H22 | 119.7 |
| C10—C9—H9 | 121.4 | C22—C23—C18 | 119.89 (18) |
| C8—C9—H9 | 121.4 | C22—C23—H23 | 120.1 |
| C9—C10—C5 | 121.70 (16) | C18—C23—H23 | 120.1 |
| O2—C1—C2—C3 | 0.9 (2) | C10—N1—C11—S1 | −179.11 (12) |
| O1—C1—C2—C3 | −178.65 (14) | C5—C4—C11—N1 | −0.43 (18) |
| C1—C2—C3—C4 | −179.85 (13) | C3—C4—C11—N1 | −123.38 (16) |
| C2—C3—C4—C5 | −52.58 (19) | S2—C4—C11—N1 | 119.15 (13) |
| C2—C3—C4—C11 | 61.13 (19) | C5—C4—C11—S1 | 178.90 (11) |
| C2—C3—C4—S2 | −178.10 (12) | C3—C4—C11—S1 | 55.95 (17) |
| C18—S2—C4—C5 | 60.67 (13) | S2—C4—C11—S1 | −61.52 (14) |
| C18—S2—C4—C3 | −172.58 (11) | C12—S1—C11—N1 | 3.10 (17) |
| C18—S2—C4—C11 | −50.24 (13) | C12—S1—C11—C4 | −176.13 (12) |
| C3—C4—C5—C6 | −57.2 (2) | C11—S1—C12—C17 | −74.16 (15) |
| C11—C4—C5—C6 | −178.58 (17) | C11—S1—C12—C13 | 109.44 (14) |
| S2—C4—C5—C6 | 63.8 (2) | C17—C12—C13—C14 | −0.8 (3) |
| C3—C4—C5—C10 | 121.86 (15) | S1—C12—C13—C14 | 175.62 (14) |
| C11—C4—C5—C10 | 0.53 (16) | C12—C13—C14—C15 | 0.1 (3) |
| S2—C4—C5—C10 | −117.07 (13) | C13—C14—C15—C16 | 1.3 (3) |
| C10—C5—C6—C7 | 1.9 (2) | C14—C15—C16—C17 | −1.8 (3) |
| C4—C5—C6—C7 | −179.11 (16) | C15—C16—C17—C12 | 1.1 (3) |
| C5—C6—C7—C8 | −1.2 (3) | C13—C12—C17—C16 | 0.2 (3) |
| C6—C7—C8—C9 | −0.2 (3) | S1—C12—C17—C16 | −176.11 (14) |
| C7—C8—C9—C10 | 1.0 (3) | C4—S2—C18—C19 | 100.86 (16) |
| C8—C9—C10—C5 | −0.4 (2) | C4—S2—C18—C23 | −81.59 (15) |
| C8—C9—C10—N1 | 179.83 (15) | C23—C18—C19—C20 | 0.9 (3) |
| C6—C5—C10—C9 | −1.1 (3) | S2—C18—C19—C20 | 178.48 (16) |
| C4—C5—C10—C9 | 179.70 (15) | C18—C19—C20—C21 | 0.2 (3) |
| C6—C5—C10—N1 | 178.71 (14) | C19—C20—C21—C22 | −1.2 (3) |
| C4—C5—C10—N1 | −0.51 (18) | C20—C21—C22—C23 | 1.2 (3) |
| C11—N1—C10—C9 | −179.99 (16) | C21—C22—C23—C18 | −0.2 (3) |
| C11—N1—C10—C5 | 0.23 (18) | C19—C18—C23—C22 | −0.9 (3) |
| C10—N1—C11—C4 | 0.15 (18) | S2—C18—C23—C22 | −178.43 (14) |
| H··· | ||||
| O1—H1···N1i | 0.84 | 1.96 | 2.7622 (18) | 159 |
| C3—H3 | 0.99 | 2.57 | 3.356 (2) | 136 |