Literature DB >> 26594479

Crystal structure of N,N,N-tris-[(1,3-benzo-thia-zol-2-yl)meth-yl]amine.

Velabo Mdluli1, James A Golen2, Arnold L Rheingold2, David R Manke1.   

Abstract

The title compound, C24H18N4S3, exhibits three near planar benzo-thia-zole systems in a pseudo-C 3 conformation. The dihedral angles between the planes of the benzo-thia-zole groups range from 112.56 (4) to 124.68 (4)° In the crystal, mol-ecules are connected to each other through three short C-H⋯N contacts, forming an infinite chain along [100]. The molecules are also linked by π-π interactions with each of the three five-membered thiazole rings. [inter-centroid distance range: 3.614 (1)-4.074 (1) Å, inter-planar distance range: 3.4806 (17)-3.6902 (15) Å, slippage range: 0.759 (3)-1.887 (3) Å].

Entities:  

Keywords:  C—H⋯N inter­actions; benzo­thia­zoles; crystal structure

Year:  2015        PMID: 26594479      PMCID: PMC4647366          DOI: 10.1107/S2056989015017417

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For synthesis of the title compound and a structure of the ligand bound to copper, see: Thompson et al. (1980 ▸). For a related organic structure, see: Zhang et al. (2009 ▸). For other related structures, see; Bautista & Thompson (1980 ▸); Pandey & Mathur (1995 ▸). For a study of its use as a ligand in azidealkyne cyclo­additions, see: Rodionov, Presolski, Gardinier et al. (2007 ▸); Rodionov, Presolski, Diaz et al. (2007 ▸).

Experimental

Crystal data

C24H18N4S3 M = 495.66 Triclinic, a = 6.6530 (3) Å b = 14.3098 (6) Å c = 14.5822 (7) Å α = 61.471 (1)° β = 88.474 (2)° γ = 79.138 (1)° V = 1194.61 (9) Å3 Z = 2 Mo Kα radiation μ = 0.34 mm−1 T = 100 K 0.15 × 0.12 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▸) T min = 0.951, T max = 0.967 4691 measured reflections 4691 independent reflections 3767 reflections with I > 2σ(I) R int = 0.000

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.110 S = 1.08 4691 reflections 280 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.29 e Å−3

Data collection: APEX2 (Bruker, 2005 ▸); cell refinement: SAINT (Bruker, 2005 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸) and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015017417/ff2141sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017417/ff2141Isup2.hkl Supporting information file. DOI: 10.1107/S2056989015017417/ff2141Isup3.txt Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015017417/ff2141Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015017417/ff2141fig1.tif Mol­ecular structure of the title compound, showing the atom labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as spheres of arbitrary radius. Click here for additional data file. . DOI: 10.1107/S2056989015017417/ff2141fig2.tif Mol­ecular packing of the title compound. CCDC reference: 1425576 Additional supporting information: crystallographic information; 3D view; checkCIF report
C24H18N4S3Z = 2
Mr = 495.66F(000) = 518
Triclinic, P1Dx = 1.378 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.6530 (3) ÅCell parameters from 6510 reflections
b = 14.3098 (6) Åθ = 3.1–25.7°
c = 14.5822 (7) ŵ = 0.34 mm1
α = 61.471 (1)°T = 100 K
β = 88.474 (2)°Block, yellow
γ = 79.138 (1)°0.15 × 0.12 × 0.10 mm
V = 1194.61 (9) Å3
Bruker APEXII CCD diffractometer4691 independent reflections
Radiation source: fine-focus ROTATING ANODE3767 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.0000
φ and ω scansθmax = 26.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.951, Tmax = 0.967k = −15→17
4691 measured reflectionsl = 0→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0612P)2 + 0.0926P] where P = (Fo2 + 2Fc2)/3
4691 reflections(Δ/σ)max < 0.001
280 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.40279 (7)0.15702 (4)0.47208 (4)0.04313 (15)
S20.27604 (8)0.38911 (4)0.15881 (4)0.04461 (16)
S30.25502 (7)0.44886 (4)0.38876 (5)0.04767 (16)
N10.1195 (2)0.05355 (12)0.57200 (13)0.0416 (4)
N2−0.0211 (2)0.34050 (12)0.08966 (12)0.0405 (4)
N3−0.1239 (2)0.54789 (12)0.36542 (12)0.0382 (4)
N4−0.0043 (2)0.30973 (12)0.34526 (12)0.0368 (4)
C10.0012 (3)0.19336 (15)0.39103 (15)0.0418 (5)
H1B0.03580.17020.33750.050*
H1A−0.13610.17840.41390.050*
C20.1562 (3)0.13010 (14)0.48240 (15)0.0384 (4)
C30.4652 (3)0.05555 (14)0.60010 (15)0.0387 (4)
C40.6507 (3)0.01905 (15)0.66060 (18)0.0483 (5)
H4A0.76860.04800.63180.058*
C50.6574 (3)−0.06029 (16)0.76342 (18)0.0558 (6)
H5A0.7813−0.08530.80640.067*
C60.4877 (4)−0.10437 (17)0.8055 (2)0.0628 (6)
H6A0.4962−0.15810.87700.075*
C70.3052 (3)−0.07124 (16)0.74462 (18)0.0570 (6)
H7A0.1903−0.10350.77310.068*
C80.2940 (3)0.00976 (13)0.64160 (16)0.0403 (4)
C9−0.1080 (3)0.37025 (16)0.23985 (15)0.0424 (5)
H9A−0.15360.44750.22140.051*
H9B−0.23110.34120.23880.051*
C100.0308 (3)0.36203 (14)0.16109 (14)0.0374 (4)
C110.3140 (3)0.37193 (14)0.04962 (14)0.0375 (4)
C120.4860 (3)0.37765 (15)−0.00699 (15)0.0440 (5)
H12A0.60350.39680.00990.053*
C130.4821 (3)0.35475 (16)−0.08855 (15)0.0473 (5)
H13A0.59840.3582−0.12840.057*
C140.3113 (3)0.32676 (17)−0.11319 (16)0.0521 (5)
H14A0.31290.3104−0.16920.063*
C150.1381 (3)0.32219 (17)−0.05775 (16)0.0501 (5)
H15A0.02050.3039−0.07580.060*
C160.1393 (3)0.34469 (14)0.02442 (14)0.0377 (4)
C17−0.0894 (3)0.35415 (15)0.41340 (16)0.0411 (4)
H17A−0.05000.29930.48750.049*
H17B−0.24100.37190.40320.049*
C18−0.0096 (3)0.45492 (15)0.38820 (14)0.0375 (4)
C190.2093 (3)0.58523 (15)0.35501 (14)0.0385 (4)
C200.3495 (3)0.65143 (16)0.33751 (17)0.0477 (5)
H20A0.49300.62330.34680.057*
C210.2730 (4)0.75976 (17)0.30610 (18)0.0531 (5)
H21A0.36570.80730.29220.064*
C220.0642 (3)0.80027 (16)0.29458 (17)0.0521 (5)
H22A0.01590.87520.27260.062*
C23−0.0763 (3)0.73355 (16)0.31451 (17)0.0486 (5)
H23A−0.21960.76170.30730.058*
C24−0.0023 (3)0.62444 (14)0.34531 (14)0.0364 (4)
U11U22U33U12U13U23
S10.0398 (3)0.0435 (3)0.0487 (3)−0.0190 (2)0.0104 (2)−0.0209 (2)
S20.0367 (3)0.0614 (3)0.0469 (3)−0.0167 (2)0.0027 (2)−0.0324 (3)
S30.0343 (3)0.0435 (3)0.0722 (4)−0.0075 (2)0.0131 (2)−0.0339 (3)
N10.0365 (9)0.0334 (8)0.0527 (10)−0.0113 (7)0.0097 (8)−0.0179 (8)
N20.0331 (8)0.0457 (9)0.0415 (9)−0.0078 (7)−0.0041 (7)−0.0197 (8)
N30.0354 (8)0.0461 (9)0.0381 (9)−0.0046 (7)0.0009 (7)−0.0253 (7)
N40.0352 (8)0.0386 (8)0.0390 (9)−0.0090 (7)0.0041 (7)−0.0201 (7)
C10.0392 (11)0.0432 (10)0.0479 (12)−0.0160 (8)0.0061 (9)−0.0232 (9)
C20.0373 (10)0.0346 (9)0.0504 (12)−0.0123 (8)0.0103 (9)−0.0247 (9)
C30.0369 (10)0.0308 (9)0.0528 (12)−0.0070 (8)0.0085 (9)−0.0237 (9)
C40.0384 (11)0.0405 (10)0.0672 (15)−0.0057 (9)0.0051 (10)−0.0277 (11)
C50.0469 (13)0.0415 (11)0.0648 (15)0.0036 (9)−0.0063 (11)−0.0183 (11)
C60.0592 (15)0.0426 (12)0.0606 (15)0.0021 (11)0.0007 (12)−0.0085 (11)
C70.0500 (13)0.0374 (11)0.0658 (15)−0.0093 (9)0.0130 (11)−0.0110 (11)
C80.0378 (10)0.0288 (9)0.0525 (12)−0.0066 (8)0.0088 (9)−0.0184 (9)
C90.0331 (10)0.0485 (11)0.0446 (11)−0.0055 (8)−0.0005 (8)−0.0225 (9)
C100.0324 (10)0.0362 (9)0.0390 (11)−0.0056 (8)−0.0043 (8)−0.0146 (8)
C110.0368 (10)0.0353 (9)0.0334 (10)−0.0069 (8)−0.0041 (8)−0.0109 (8)
C120.0406 (11)0.0473 (11)0.0415 (11)−0.0137 (9)0.0020 (9)−0.0176 (9)
C130.0490 (12)0.0500 (12)0.0358 (11)−0.0078 (9)0.0037 (9)−0.0158 (9)
C140.0560 (14)0.0618 (13)0.0373 (11)−0.0071 (11)−0.0024 (10)−0.0244 (10)
C150.0468 (12)0.0616 (13)0.0448 (12)−0.0143 (10)−0.0070 (10)−0.0263 (10)
C160.0376 (10)0.0362 (9)0.0334 (10)−0.0043 (8)−0.0069 (8)−0.0126 (8)
C170.0345 (10)0.0463 (11)0.0481 (12)−0.0117 (8)0.0106 (9)−0.0261 (9)
C180.0350 (10)0.0444 (10)0.0371 (10)−0.0087 (8)0.0070 (8)−0.0228 (9)
C190.0393 (11)0.0428 (10)0.0401 (11)−0.0071 (8)0.0080 (8)−0.0258 (9)
C200.0420 (11)0.0521 (12)0.0616 (13)−0.0119 (9)0.0134 (10)−0.0368 (11)
C210.0573 (14)0.0525 (12)0.0647 (15)−0.0193 (10)0.0162 (11)−0.0379 (11)
C220.0600 (14)0.0419 (11)0.0588 (14)−0.0065 (10)0.0019 (11)−0.0290 (10)
C230.0453 (12)0.0484 (11)0.0535 (13)0.0009 (9)−0.0042 (10)−0.0290 (10)
C240.0387 (10)0.0426 (10)0.0330 (10)−0.0058 (8)0.0010 (8)−0.0230 (8)
S1—C31.729 (2)C7—H7A0.9500
S1—C21.7415 (18)C9—C101.489 (3)
S2—C111.729 (2)C9—H9A0.9900
S2—C101.7423 (18)C9—H9B0.9900
S3—C191.7349 (18)C11—C121.385 (3)
S3—C181.7460 (18)C11—C161.403 (3)
N1—C21.297 (2)C12—C131.378 (3)
N1—C81.397 (2)C12—H12A0.9500
N2—C101.290 (2)C13—C141.383 (3)
N2—C161.401 (2)C13—H13A0.9500
N3—C181.292 (2)C14—C151.384 (3)
N3—C241.398 (2)C14—H14A0.9500
N4—C11.462 (2)C15—C161.382 (3)
N4—C91.466 (2)C15—H15A0.9500
N4—C171.466 (2)C17—C181.506 (2)
C1—C21.493 (3)C17—H17A0.9900
C1—H1B0.9900C17—H17B0.9900
C1—H1A0.9900C19—C201.386 (3)
C3—C41.396 (3)C19—C241.398 (3)
C3—C81.399 (3)C20—C211.381 (3)
C4—C51.377 (3)C20—H20A0.9500
C4—H4A0.9500C21—C221.382 (3)
C5—C61.382 (3)C21—H21A0.9500
C5—H5A0.9500C22—C231.388 (3)
C6—C71.388 (3)C22—H22A0.9500
C6—H6A0.9500C23—C241.391 (3)
C7—C81.384 (3)C23—H23A0.9500
C3—S1—C289.03 (9)C12—C11—C16121.21 (18)
C11—S2—C1089.09 (9)C12—C11—S2129.24 (15)
C19—S3—C1889.02 (9)C16—C11—S2109.49 (14)
C2—N1—C8110.35 (15)C13—C12—C11118.16 (19)
C10—N2—C16110.28 (15)C13—C12—H12A120.9
C18—N3—C24110.23 (15)C11—C12—H12A120.9
C1—N4—C9111.51 (14)C12—C13—C14120.96 (19)
C1—N4—C17112.81 (14)C12—C13—H13A119.5
C9—N4—C17112.20 (14)C14—C13—H13A119.5
N4—C1—C2110.82 (14)C13—C14—C15121.1 (2)
N4—C1—H1B109.5C13—C14—H14A119.4
C2—C1—H1B109.5C15—C14—H14A119.4
N4—C1—H1A109.5C16—C15—C14118.71 (19)
C2—C1—H1A109.5C16—C15—H15A120.6
H1B—C1—H1A108.1C14—C15—H15A120.6
N1—C2—C1123.72 (17)C15—C16—N2125.52 (18)
N1—C2—S1116.22 (15)C15—C16—C11119.80 (18)
C1—C2—S1120.06 (13)N2—C16—C11114.66 (16)
C4—C3—C8120.91 (18)N4—C17—C18109.94 (14)
C4—C3—S1129.40 (15)N4—C17—H17A109.7
C8—C3—S1109.69 (14)C18—C17—H17A109.7
C5—C4—C3117.91 (19)N4—C17—H17B109.7
C5—C4—H4A121.0C18—C17—H17B109.7
C3—C4—H4A121.0H17A—C17—H17B108.2
C4—C5—C6121.4 (2)N3—C18—C17124.56 (16)
C4—C5—H5A119.3N3—C18—S3116.31 (14)
C6—C5—H5A119.3C17—C18—S3119.13 (14)
C5—C6—C7120.9 (2)C20—C19—C24121.92 (17)
C5—C6—H6A119.6C20—C19—S3128.84 (15)
C7—C6—H6A119.6C24—C19—S3109.24 (13)
C8—C7—C6118.6 (2)C21—C20—C19117.64 (19)
C8—C7—H7A120.7C21—C20—H20A121.2
C6—C7—H7A120.7C19—C20—H20A121.2
C7—C8—N1125.12 (18)C20—C21—C22121.2 (2)
C7—C8—C3120.18 (19)C20—C21—H21A119.4
N1—C8—C3114.70 (17)C22—C21—H21A119.4
N4—C9—C10111.13 (15)C21—C22—C23121.23 (19)
N4—C9—H9A109.4C21—C22—H22A119.4
C10—C9—H9A109.4C23—C22—H22A119.4
N4—C9—H9B109.4C22—C23—C24118.42 (19)
C10—C9—H9B109.4C22—C23—H23A120.8
H9A—C9—H9B108.0C24—C23—H23A120.8
N2—C10—C9124.19 (17)C23—C24—N3125.21 (17)
N2—C10—S2116.46 (15)C23—C24—C19119.57 (17)
C9—C10—S2119.28 (14)N3—C24—C19115.20 (16)
C9—N4—C1—C2163.44 (15)C11—C12—C13—C140.0 (3)
C17—N4—C1—C2−69.23 (19)C12—C13—C14—C150.8 (3)
C8—N1—C2—C1−179.97 (16)C13—C14—C15—C16−0.9 (3)
C8—N1—C2—S10.3 (2)C14—C15—C16—N2−178.09 (17)
N4—C1—C2—N1132.22 (18)C14—C15—C16—C110.3 (3)
N4—C1—C2—S1−48.1 (2)C10—N2—C16—C15177.63 (18)
C3—S1—C2—N10.28 (15)C10—N2—C16—C11−0.8 (2)
C3—S1—C2—C1−179.47 (15)C12—C11—C16—C150.5 (3)
C2—S1—C3—C4179.89 (18)S2—C11—C16—C15−177.11 (15)
C2—S1—C3—C8−0.75 (14)C12—C11—C16—N2179.05 (16)
C8—C3—C4—C5−2.5 (3)S2—C11—C16—N21.42 (19)
S1—C3—C4—C5176.78 (16)C1—N4—C17—C18155.22 (15)
C3—C4—C5—C61.2 (3)C9—N4—C17—C18−77.82 (19)
C4—C5—C6—C71.1 (4)C24—N3—C18—C17−179.50 (16)
C5—C6—C7—C8−2.2 (3)C24—N3—C18—S30.4 (2)
C6—C7—C8—N1−178.05 (19)N4—C17—C18—N3126.01 (19)
C6—C7—C8—C30.9 (3)N4—C17—C18—S3−53.8 (2)
C2—N1—C8—C7178.12 (19)C19—S3—C18—N30.05 (15)
C2—N1—C8—C3−0.9 (2)C19—S3—C18—C17179.91 (15)
C4—C3—C8—C71.4 (3)C18—S3—C19—C20−179.60 (19)
S1—C3—C8—C7−177.98 (16)C18—S3—C19—C24−0.43 (14)
C4—C3—C8—N1−179.48 (16)C24—C19—C20—C21−2.3 (3)
S1—C3—C8—N11.1 (2)S3—C19—C20—C21176.77 (16)
C1—N4—C9—C10−79.28 (18)C19—C20—C21—C221.3 (3)
C17—N4—C9—C10153.06 (15)C20—C21—C22—C230.2 (3)
C16—N2—C10—C9176.60 (16)C21—C22—C23—C24−0.8 (3)
C16—N2—C10—S2−0.2 (2)C22—C23—C24—N3−178.19 (18)
N4—C9—C10—N2133.35 (18)C22—C23—C24—C19−0.2 (3)
N4—C9—C10—S2−49.92 (19)C18—N3—C24—C23177.37 (18)
C11—S2—C10—N20.87 (15)C18—N3—C24—C19−0.7 (2)
C11—S2—C10—C9−176.10 (15)C20—C19—C24—C231.8 (3)
C10—S2—C11—C12−178.60 (18)S3—C19—C24—C23−177.46 (14)
C10—S2—C11—C16−1.23 (13)C20—C19—C24—N3179.98 (17)
C16—C11—C12—C13−0.6 (3)S3—C19—C24—N30.7 (2)
S2—C11—C12—C13176.48 (14)
D—H···AD—HH···AD···AD—H···A
C4—H4A···N1i0.952.473.376 (3)159
C12—H12A···N2i0.952.603.449 (2)150
C20—H20A···N3i0.952.543.490 (3)178
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C4H4AN1i 0.952.473.376(3)159
C12H12AN2i 0.952.603.449(2)150
C20H20AN3i 0.952.543.490(3)178

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis(benzothia-zol-2-ylmeth-yl)amine.

Authors:  Yong Zhang; Bi-Lin Zhao; Shi-Lei Zhang; Yuan Qu; Xian-You Xia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-24

3.  Benzimidazole and related ligands for Cu-catalyzed azide-alkyne cycloaddition.

Authors:  Valentin O Rodionov; Stanislav I Presolski; Sean Gardinier; Yeon-Hee Lim; M G Finn
Journal:  J Am Chem Soc       Date:  2007-10-03       Impact factor: 15.419

4.  Ligand-accelerated Cu-catalyzed azide-alkyne cycloaddition: a mechanistic report.

Authors:  Valentin O Rodionov; Stanislav I Presolski; David Díaz Díaz; Valery V Fokin; M G Finn
Journal:  J Am Chem Soc       Date:  2007-10-03       Impact factor: 15.419

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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