Literature DB >> 21582933

Bis(benzothia-zol-2-ylmeth-yl)amine.

Yong Zhang1, Bi-Lin Zhao, Shi-Lei Zhang, Yuan Qu, Xian-You Xia.   

Abstract

In the title compound, C(16)H(13)N(3)S(2), the dihedral angle between the two benzothia-zole ring systems is 20.41 (2)°. In the crystal structure, inter-molecular N-H⋯N hydrogen bonds link mol-ecules into a chain along the b axis. The packing is further stabilized by C-H⋯π stacking inter-actions involving the two benzothia-zole ring systems.

Entities:  

Year:  2009        PMID: 21582933      PMCID: PMC2969256          DOI: 10.1107/S1600536809023435

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of benzothiazole devivatives, see: Pinheiro et al. (1990 ▶); Emad et al. (2009 ▶). For their use as ligands, see: Oughtred et al. (1982 ▶); Akther et al. (2008 ▶). For related structures, see: Laurence et al. (1980 ▶.

Experimental

Crystal data

C16H13N3S2 M = 311.41 Monoclinic, a = 7.8478 (5) Å b = 5.8042 (3) Å c = 16.1548 (9) Å β = 97.910 (1)° V = 728.85 (7) Å3 Z = 2 Mo Kα radiation μ = 0.36 mm−1 T = 298 K 0.23 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.889, T max = 0.965 9009 measured reflections 3603 independent reflections 3473 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.079 S = 1.07 3603 reflections 193 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1623 Friedel pairs Flack parameter: −0.07 (4) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶; data reduction: SAINT-Plus program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809023435/pk2169sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809023435/pk2169Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13N3S2F(000) = 324
Mr = 311.41Dx = 1.419 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 6428 reflections
a = 7.8478 (5) Åθ = 2.6–28.2°
b = 5.8042 (3) ŵ = 0.36 mm1
c = 16.1548 (9) ÅT = 298 K
β = 97.910 (1)°Block, colourless
V = 728.85 (7) Å30.23 × 0.12 × 0.10 mm
Z = 2
Bruker SMART APEX CCD area-detector diffractometer3603 independent reflections
Radiation source: fine focus sealed Siemens Mo tube3473 reflections with I > 2σ(I)
graphiteRint = 0.032
0.3° wide ω exposures scansθmax = 28.3°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −10→10
Tmin = 0.889, Tmax = 0.965k = −7→7
9009 measured reflectionsl = −21→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.079w = 1/[σ2(Fo2) + (0.0549P)2 + 0.0014P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.002
3603 reflectionsΔρmax = 0.19 e Å3
193 parametersΔρmin = −0.22 e Å3
1 restraintAbsolute structure: Flack (1983), 1621 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.07 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.32522 (18)−0.2480 (3)0.92805 (8)0.0469 (3)
H1A0.4335−0.33060.93800.056*
H1B0.2355−0.35730.90780.056*
C20.28685 (17)−0.1421 (3)1.00759 (9)0.0421 (3)
C30.27501 (17)−0.0905 (3)1.14199 (9)0.0419 (3)
C40.30208 (19)−0.1344 (3)1.22742 (9)0.0508 (3)
H40.3569−0.26851.24830.061*
C50.2453 (2)0.0270 (3)1.28049 (10)0.0563 (4)
H50.26260.00011.33780.068*
C60.1634 (2)0.2274 (4)1.25053 (10)0.0552 (4)
H60.12790.33281.28800.066*
C70.13337 (18)0.2734 (3)1.16584 (9)0.0512 (3)
H70.07750.40741.14560.061*
C80.18981 (17)0.1116 (3)1.11172 (8)0.0430 (3)
C90.3518 (2)−0.1629 (3)0.78314 (9)0.0520 (4)
H9A0.2734−0.29160.77120.062*
H9B0.4680−0.21940.78270.062*
C100.31251 (18)0.0167 (3)0.71708 (9)0.0440 (3)
C110.30569 (18)0.1982 (3)0.59715 (9)0.0463 (3)
C120.3417 (2)0.2449 (4)0.51678 (10)0.0589 (4)
H120.41350.14860.49120.071*
C130.2688 (2)0.4370 (4)0.47583 (10)0.0628 (5)
H130.29300.47050.42240.075*
C140.1602 (2)0.5812 (4)0.51276 (11)0.0617 (4)
H140.11310.71000.48400.074*
C150.1213 (2)0.5352 (3)0.59197 (11)0.0571 (4)
H150.04820.63130.61680.069*
C160.19401 (18)0.3417 (3)0.63367 (9)0.0449 (3)
N10.33530 (16)−0.0701 (2)0.86544 (8)0.0462 (3)
H10.413 (2)0.023 (3)0.8796 (11)0.055*
N20.32946 (14)−0.2309 (2)1.08061 (7)0.0448 (3)
N30.37321 (16)0.0144 (3)0.64678 (8)0.0499 (3)
S10.17864 (5)0.12218 (6)1.00381 (2)0.04752 (10)
S20.17133 (5)0.23922 (7)0.73265 (2)0.05010 (11)
U11U22U33U12U13U23
C10.0526 (7)0.0424 (7)0.0455 (7)0.0054 (7)0.0062 (6)0.0017 (6)
C20.0395 (6)0.0388 (7)0.0475 (7)0.0010 (5)0.0043 (5)0.0032 (6)
C30.0399 (6)0.0417 (7)0.0443 (7)−0.0007 (5)0.0062 (5)0.0049 (5)
C40.0519 (8)0.0532 (8)0.0471 (8)0.0010 (7)0.0059 (6)0.0091 (7)
C50.0587 (9)0.0677 (10)0.0437 (8)−0.0003 (8)0.0109 (7)0.0042 (7)
C60.0572 (8)0.0576 (9)0.0528 (8)0.0004 (8)0.0145 (6)−0.0076 (8)
C70.0522 (8)0.0476 (8)0.0536 (8)0.0050 (7)0.0065 (6)0.0001 (7)
C80.0416 (6)0.0446 (7)0.0425 (6)−0.0012 (6)0.0044 (5)0.0024 (6)
C90.0669 (9)0.0443 (8)0.0453 (8)0.0058 (7)0.0093 (7)−0.0039 (6)
C100.0469 (6)0.0413 (7)0.0435 (7)0.0005 (6)0.0046 (5)−0.0077 (6)
C110.0440 (7)0.0546 (9)0.0392 (6)−0.0016 (6)0.0022 (5)−0.0045 (6)
C120.0568 (8)0.0778 (12)0.0426 (7)0.0046 (9)0.0082 (6)−0.0028 (9)
C130.0641 (9)0.0788 (13)0.0439 (8)−0.0109 (9)0.0011 (7)0.0083 (8)
C140.0631 (9)0.0596 (11)0.0592 (9)−0.0012 (8)−0.0036 (7)0.0124 (8)
C150.0592 (8)0.0528 (9)0.0589 (9)0.0037 (8)0.0059 (7)0.0034 (8)
C160.0432 (7)0.0445 (7)0.0469 (7)−0.0045 (6)0.0055 (5)−0.0024 (6)
N10.0540 (7)0.0441 (7)0.0405 (6)−0.0066 (6)0.0063 (5)−0.0029 (5)
N20.0470 (6)0.0423 (6)0.0454 (6)0.0026 (5)0.0079 (5)0.0056 (5)
N30.0542 (6)0.0545 (7)0.0411 (6)0.0064 (6)0.0066 (5)−0.0048 (6)
S10.0553 (2)0.04359 (19)0.04214 (17)0.00959 (16)0.00134 (13)0.00366 (15)
S20.0592 (2)0.04371 (19)0.05053 (19)0.00410 (16)0.01872 (15)−0.00142 (15)
C1—N11.4554 (19)C9—C101.493 (2)
C1—C21.4922 (19)C9—H9A0.9700
C1—H1A0.9700C9—H9B0.9700
C1—H1B0.9700C10—N31.2906 (18)
C2—N21.2884 (18)C10—S21.7424 (15)
C2—S11.7503 (15)C11—C121.393 (2)
C3—C41.391 (2)C11—N31.394 (2)
C3—N21.3951 (18)C11—C161.397 (2)
C3—C81.404 (2)C12—C131.380 (3)
C4—C51.384 (2)C12—H120.9300
C4—H40.9300C13—C141.387 (3)
C5—C61.383 (3)C13—H130.9300
C5—H50.9300C14—C151.382 (2)
C6—C71.382 (2)C14—H140.9300
C6—H60.9300C15—C161.391 (2)
C7—C81.396 (2)C15—H150.9300
C7—H70.9300C16—S21.7382 (15)
C8—S11.7344 (13)N1—H10.821 (19)
C9—N11.4567 (18)
N1—C1—C2110.05 (13)C10—C9—H9B109.4
N1—C1—H1A109.7H9A—C9—H9B108.0
C2—C1—H1A109.7N3—C10—C9123.85 (14)
N1—C1—H1B109.7N3—C10—S2116.97 (13)
C2—C1—H1B109.7C9—C10—S2119.14 (11)
H1A—C1—H1B108.2C12—C11—N3125.12 (15)
N2—C2—C1124.47 (14)C12—C11—C16119.78 (16)
N2—C2—S1116.49 (12)N3—C11—C16115.10 (12)
C1—C2—S1119.04 (11)C13—C12—C11118.72 (17)
C4—C3—N2125.36 (14)C13—C12—H12120.6
C4—C3—C8119.93 (14)C11—C12—H12120.6
N2—C3—C8114.70 (12)C12—C13—C14121.34 (16)
C5—C4—C3118.20 (15)C12—C13—H13119.3
C5—C4—H4120.9C14—C13—H13119.3
C3—C4—H4120.9C15—C14—C13120.60 (17)
C6—C5—C4121.73 (15)C15—C14—H14119.7
C6—C5—H5119.1C13—C14—H14119.7
C4—C5—H5119.1C14—C15—C16118.44 (16)
C7—C6—C5121.09 (17)C14—C15—H15120.8
C7—C6—H6119.5C16—C15—H15120.8
C5—C6—H6119.5C15—C16—C11121.09 (14)
C6—C7—C8117.68 (16)C15—C16—S2129.40 (13)
C6—C7—H7121.2C11—C16—S2109.50 (11)
C8—C7—H7121.2C1—N1—C9113.07 (13)
C7—C8—C3121.37 (13)C1—N1—H1112.4 (13)
C7—C8—S1128.98 (12)C9—N1—H1110.0 (12)
C3—C8—S1109.60 (11)C2—N2—C3110.55 (13)
N1—C9—C10111.02 (13)C10—N3—C11109.95 (13)
N1—C9—H9A109.4C8—S1—C288.66 (7)
C10—C9—H9A109.4C16—S2—C1088.47 (7)
N1—C9—H9B109.4
N1—C1—C2—N2−153.63 (14)C12—C11—C16—C15−1.8 (2)
N1—C1—C2—S125.69 (16)N3—C11—C16—C15178.18 (14)
N2—C3—C4—C5177.62 (14)C12—C11—C16—S2179.13 (13)
C8—C3—C4—C5−0.9 (2)N3—C11—C16—S2−0.91 (16)
C3—C4—C5—C60.1 (2)C2—C1—N1—C9−173.01 (13)
C4—C5—C6—C70.6 (3)C10—C9—N1—C1164.09 (13)
C5—C6—C7—C8−0.5 (2)C1—C2—N2—C3−179.90 (13)
C6—C7—C8—C3−0.4 (2)S1—C2—N2—C30.76 (16)
C6—C7—C8—S1−177.64 (12)C4—C3—N2—C2−179.17 (14)
C4—C3—C8—C71.1 (2)C8—C3—N2—C2−0.58 (18)
N2—C3—C8—C7−177.61 (13)C9—C10—N3—C11176.92 (14)
C4—C3—C8—S1178.83 (11)S2—C10—N3—C11−0.93 (17)
N2—C3—C8—S10.15 (15)C12—C11—N3—C10−178.86 (15)
N1—C9—C10—N3154.02 (15)C16—C11—N3—C101.18 (18)
N1—C9—C10—S2−28.18 (18)C7—C8—S1—C2177.75 (14)
N3—C11—C12—C13−178.31 (16)C3—C8—S1—C20.21 (10)
C16—C11—C12—C131.7 (2)N2—C2—S1—C8−0.59 (11)
C11—C12—C13—C14−0.6 (3)C1—C2—S1—C8−179.96 (12)
C12—C13—C14—C15−0.3 (3)C15—C16—S2—C10−178.68 (16)
C13—C14—C15—C160.2 (3)C11—C16—S2—C100.31 (11)
C14—C15—C16—C110.8 (2)N3—C10—S2—C160.37 (13)
C14—C15—C16—S2179.72 (13)C9—C10—S2—C16−177.58 (13)
D—H···AD—HH···AD···AD—H···A
N1—H1···N2i0.821 (19)2.489 (19)3.3054 (18)173.5 (17)
C1—H1···Cg1ii0.972.783.737 (16)168
C9—H9···Cg2ii0.972.733.689 (17)170
C14—H14···Cg3iii0.932.893.598 (2)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N2i0.821 (19)2.489 (19)3.3054 (18)173.5 (17)
C1—H1⋯Cg1ii0.972.783.737 (16)168
C9—H9⋯Cg2ii0.972.733.689 (17)170
C14—H14⋯Cg3iii0.932.893.598 (2)134

Symmetry codes: (i) ; (ii) ; (iii) . Cg1, Cg2, Cg3 are the centroids of the S1,C2,N2,C3,C8, C3–C8 and C11–C16 rings, respectively.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,9-Bis(1,3-benzothia-zol-2-yl)-1,10-phenanthroline dichloro-methane disolvate.

Authors:  Jesmin Akther; Sergey Lindeman; Mohammad Rezaul Karim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-30

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  Crystal structure of N,N,N-tris-[(1,3-benzo-thia-zol-2-yl)meth-yl]amine.

Authors:  Velabo Mdluli; James A Golen; Arnold L Rheingold; David R Manke
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-09-26
  1 in total

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