| Literature DB >> 26594438 |
Eunjin Kwon1, Jineun Kim1, Gihaeng Kang1, Tae Ho Kim1.
Abstract
In the title compound, C10H6Cl2N2 (systematic name: 4,6-di-chloro-2-phenyl-pyrimidine), which is used commercially as the herbicide safener, fenclorim, the dihedral angle between the di-chloro-pyrimidyl and phenyl rings is 9.45 (10)°. In the crystal, C-H⋯N hydrogen bonds link adjacent mol-ecules, forming chains along the c-axis direction. In addition, weak inter-molecular C-Cl⋯π [3.6185 (10) Å] and π-π [3.8796 (11) Å] inter-actions are present, forming a three-dimensional network.Entities:
Keywords: C—Cl⋯π interactions; crystal structure; fenclorim; herbicide; hydrogen bonding; pyrimidine; π–π interactions
Year: 2015 PMID: 26594438 PMCID: PMC4647348 DOI: 10.1107/S2056989015016187
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C10H6Cl2N2 | |
| Monoclinic, | Mo |
| Cell parameters from 2286 reflections | |
| θ = 2.3–25.9° | |
| µ = 0.62 mm−1 | |
| β = 99.690 (6)° | |
| Plate, colourless | |
| 0.16 × 0.06 × 0.04 mm |
| Bruker APEXII CCD diffractometer | 1750 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan ( | θmax = 27.5°, θmin = 2.3° |
| 9071 measured reflections | |
| 2212 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2212 reflections | Δρmax = 0.28 e Å−3 |
| 127 parameters | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Cl1 | 0.65642 (9) | 0.34546 (3) | −0.36827 (4) | 0.04016 (15) | |
| Cl2 | 0.00001 (9) | 0.21187 (3) | −0.11631 (4) | 0.03800 (15) | |
| N1 | 0.6078 (2) | 0.37521 (8) | −0.12511 (13) | 0.0265 (3) | |
| N2 | 0.3094 (2) | 0.31826 (8) | −0.01497 (13) | 0.0251 (3) | |
| C1 | 0.5151 (3) | 0.33485 (10) | −0.23126 (16) | 0.0266 (4) | |
| C2 | 0.3205 (3) | 0.28518 (10) | −0.24028 (16) | 0.0274 (4) | |
| H2 | 0.2551 | 0.2580 | −0.3190 | 0.033* | |
| C3 | 0.2296 (3) | 0.27863 (10) | −0.12406 (16) | 0.0258 (4) | |
| C4 | 0.4978 (3) | 0.36583 (9) | −0.01979 (15) | 0.0239 (4) | |
| C5 | 0.5944 (3) | 0.41068 (10) | 0.10104 (15) | 0.0248 (4) | |
| C6 | 0.4715 (3) | 0.41288 (10) | 0.20807 (16) | 0.0294 (4) | |
| H6 | 0.3240 | 0.3851 | 0.2044 | 0.035* | |
| C7 | 0.5644 (4) | 0.45554 (11) | 0.31979 (17) | 0.0355 (4) | |
| H7 | 0.4809 | 0.4566 | 0.3929 | 0.043* | |
| C8 | 0.7773 (4) | 0.49654 (12) | 0.32573 (18) | 0.0381 (5) | |
| H8 | 0.8395 | 0.5259 | 0.4026 | 0.046* | |
| C9 | 0.9000 (3) | 0.49498 (12) | 0.22019 (19) | 0.0391 (5) | |
| H9 | 1.0460 | 0.5236 | 0.2239 | 0.047* | |
| C10 | 0.8099 (3) | 0.45159 (11) | 0.10867 (18) | 0.0332 (4) | |
| H10 | 0.8964 | 0.4498 | 0.0367 | 0.040* |
| Cl1 | 0.0519 (3) | 0.0482 (3) | 0.0248 (2) | −0.0100 (2) | 0.0192 (2) | −0.0056 (2) |
| Cl2 | 0.0424 (3) | 0.0384 (3) | 0.0344 (3) | −0.0145 (2) | 0.0099 (2) | −0.00277 (19) |
| N1 | 0.0314 (8) | 0.0280 (8) | 0.0213 (7) | −0.0007 (7) | 0.0077 (6) | −0.0002 (6) |
| N2 | 0.0290 (8) | 0.0250 (8) | 0.0217 (7) | −0.0008 (6) | 0.0056 (6) | 0.0012 (6) |
| C1 | 0.0352 (10) | 0.0268 (9) | 0.0194 (8) | 0.0042 (8) | 0.0095 (7) | 0.0021 (7) |
| C2 | 0.0346 (10) | 0.0265 (9) | 0.0210 (8) | −0.0003 (8) | 0.0042 (7) | −0.0027 (7) |
| C3 | 0.0296 (9) | 0.0234 (9) | 0.0244 (8) | −0.0008 (7) | 0.0043 (7) | 0.0021 (7) |
| C4 | 0.0278 (9) | 0.0240 (9) | 0.0200 (8) | 0.0047 (7) | 0.0046 (7) | 0.0033 (6) |
| C5 | 0.0307 (9) | 0.0226 (9) | 0.0209 (8) | 0.0032 (7) | 0.0035 (7) | 0.0011 (6) |
| C6 | 0.0375 (10) | 0.0264 (9) | 0.0253 (9) | 0.0013 (8) | 0.0080 (7) | 0.0005 (7) |
| C7 | 0.0500 (12) | 0.0366 (11) | 0.0206 (9) | 0.0080 (9) | 0.0078 (8) | −0.0013 (7) |
| C8 | 0.0442 (12) | 0.0383 (11) | 0.0276 (9) | 0.0086 (10) | −0.0063 (8) | −0.0079 (8) |
| C9 | 0.0323 (10) | 0.0415 (12) | 0.0406 (11) | −0.0028 (9) | −0.0019 (8) | −0.0081 (9) |
| C10 | 0.0316 (10) | 0.0375 (11) | 0.0311 (9) | −0.0021 (8) | 0.0073 (8) | −0.0037 (8) |
| Cl1—C1 | 1.7362 (17) | C5—C6 | 1.393 (2) |
| Cl2—C3 | 1.7333 (17) | C6—C7 | 1.384 (2) |
| N1—C1 | 1.319 (2) | C6—H6 | 0.9500 |
| N1—C4 | 1.342 (2) | C7—C8 | 1.379 (3) |
| N2—C3 | 1.320 (2) | C7—H7 | 0.9500 |
| N2—C4 | 1.342 (2) | C8—C9 | 1.378 (3) |
| C1—C2 | 1.375 (2) | C8—H8 | 0.9500 |
| C2—C3 | 1.379 (2) | C9—C10 | 1.385 (2) |
| C2—H2 | 0.9500 | C9—H9 | 0.9500 |
| C4—C5 | 1.480 (2) | C10—H10 | 0.9500 |
| C5—C10 | 1.389 (2) | ||
| C1—N1—C4 | 115.52 (14) | C6—C5—C4 | 120.90 (15) |
| C3—N2—C4 | 115.88 (14) | C7—C6—C5 | 119.93 (17) |
| N1—C1—C2 | 125.22 (15) | C7—C6—H6 | 120.0 |
| N1—C1—Cl1 | 116.28 (13) | C5—C6—H6 | 120.0 |
| C2—C1—Cl1 | 118.49 (13) | C8—C7—C6 | 120.49 (17) |
| C1—C2—C3 | 113.49 (15) | C8—C7—H7 | 119.8 |
| C1—C2—H2 | 123.3 | C6—C7—H7 | 119.8 |
| C3—C2—H2 | 123.3 | C9—C8—C7 | 120.06 (17) |
| N2—C3—C2 | 124.69 (16) | C9—C8—H8 | 120.0 |
| N2—C3—Cl2 | 116.58 (13) | C7—C8—H8 | 120.0 |
| C2—C3—Cl2 | 118.70 (13) | C8—C9—C10 | 119.83 (18) |
| N1—C4—N2 | 125.13 (15) | C8—C9—H9 | 120.1 |
| N1—C4—C5 | 117.31 (15) | C10—C9—H9 | 120.1 |
| N2—C4—C5 | 117.55 (14) | C9—C10—C5 | 120.63 (17) |
| C10—C5—C6 | 119.06 (16) | C9—C10—H10 | 119.7 |
| C10—C5—C4 | 120.04 (15) | C5—C10—H10 | 119.7 |
| C4—N1—C1—C2 | −0.4 (2) | N1—C4—C5—C10 | −8.8 (2) |
| C4—N1—C1—Cl1 | −179.46 (12) | N2—C4—C5—C10 | 170.39 (16) |
| N1—C1—C2—C3 | −1.8 (3) | N1—C4—C5—C6 | 170.99 (15) |
| Cl1—C1—C2—C3 | 177.25 (12) | N2—C4—C5—C6 | −9.9 (2) |
| C4—N2—C3—C2 | −2.3 (2) | C10—C5—C6—C7 | 0.1 (3) |
| C4—N2—C3—Cl2 | 175.70 (12) | C4—C5—C6—C7 | −179.64 (15) |
| C1—C2—C3—N2 | 3.2 (3) | C5—C6—C7—C8 | 0.5 (3) |
| C1—C2—C3—Cl2 | −174.72 (13) | C6—C7—C8—C9 | −0.3 (3) |
| C1—N1—C4—N2 | 1.6 (2) | C7—C8—C9—C10 | −0.6 (3) |
| C1—N1—C4—C5 | −179.38 (14) | C8—C9—C10—C5 | 1.2 (3) |
| C3—N2—C4—N1 | −0.3 (2) | C6—C5—C10—C9 | −1.0 (3) |
| C3—N2—C4—C5 | −179.36 (14) | C4—C5—C10—C9 | 178.79 (16) |
| H··· | ||||
| C2—H2···N2i | 0.95 | 2.46 | 3.317 (2) | 151 |
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| C2H2N2i | 0.95 | 2.46 | 3.317(2) | 151 |
Symmetry code: (i) .