Literature DB >> 26594409

Crystal structure of 3-C-(N-benzyl-oxy-carbon-yl)amino-methyl-3-de-oxy-1,2:5,6-di-O-iso-propyl-idene-α-d-allo-furan-ose.

Vitalijs Rjabovs1, Dmitrijs Stepanovs2, Maris Turks1.   

Abstract

The title compound, C21H29NO7 (1) [systematic name: benzyl ({(3aR,5S,6R,6aR)-5-[(R)-2,2-dimethyl-1,3-dioxolan-4-yl]-2,2-di-methyl-tetrahydro-furo[2,3-d][1,3]dioxol-6-yl}meth-yl)carbamate], consists of a substituted 2,2-di-methyl-tetra-hydro-furo[2,3-d][1,3]dioxolane skeleton. The furan-ose ring adopts an envelope conformation close to C 3-exo, where the C atom substituted by the benzyl carbamate group is the flap. The fused dioxolane ring also adopts an envelope conformation, as does the terminal dioxolane ring, with in each case an O atom as the flap. In the crystal, mol-ecules are linked by N-H⋯O and C-H⋯O hydrogen bonds, forming chains propagating along the b-axis direction.

Entities:  

Keywords:  3-amino­methyl diacetone-d-allose; crystal structure; hydrogen bonding.; imino sugar precursor; sugar amino acid precursor

Year:  2015        PMID: 26594409      PMCID: PMC4647424          DOI: 10.1107/S2056989015017582

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The title compound, 3-C-(N-benzyl­oxycarbon­yl)amino­methyl-3-de­oxy-1,2:5,6-di-O-iso­propyl­idene-α-d-allo­furan­ose (1), was obtained as an inter­mediate in the syntheses of carbohydrate-based non-natural amino acids, so called sugar amino acids (Rjabovs et al., 2015 ▸), by hydrogenation and carbamate protection of either nitro (Lugiņina et al., 2013 ▸) or azido (Filichev & Pedersen, 2001 ▸; Rjabova et al., 2012 ▸) precursors (Fig. 1 ▸).
Figure 1

Synthesis of the title compound.

The synthesis of sugar amino acids and their properties and applications have been reported on by Rjabovs et al. (2015 ▸), and reviewed by Rjabovs & Turks (2013 ▸) and Risseeuw et al. (2013 ▸). The title compound can be used as a precursor for the syntheses of imino sugars and 10-aza-C-nucleosides (Filichev & Pedersen, 2001 ▸). The syntheses and biological properties of imino sugars have been reviewed by López et al. (2012 ▸), while the syntheses and biological properties of aza-nucleosides have been reported on by Romeo et al. (2010 ▸) and Merino (2006 ▸).

Structural commentary

The title compound, Fig. 2 ▸, consists of a tetra­hydro­furan core fused with a dioxolane ring and substituted with dioxolane and (N-benzyl­oxycarbon­yl)amino­methyl moieties. The furan­ose ring adopts a conformation close to C 3-exo. On the other hand, the furan­ose ring may be viewed as an envelope, where atom C3 deviates from the mean plane through atoms O1/C1/C2/C4 by 0.567 (2) Å. The fused dioxolane ring also adopts an envelope conformation, where O14 deviates from the mean plane through the four near planar atoms (O12/C1/C2/C13) by 0.422 (2) Å. The dihedral angle between the planar fragments of these rings is 67.1 (1)°. The five-membered ring of the 2,2-dimethyl-1,3-dioxolan-4-yl group also adopts an envelope conformation, with atom O7 deviating from the mean plane through the four planar atoms (O9/C5/C6/C8) by 0.519 (1) Å.
Figure 2

The mol­ecular structure of compound (1), with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

Supra­molecular features

In the crystal, mol­ecules are linked by N—H⋯O and C–H⋯O hydrogen bonds, forming chains propagating along the b-axis direction (Fig. 3 ▸ and Table 1 ▸).
Figure 3

The crystal packing of compound (1), viewed along the a axis. Hydrogen bonds are shown as dashed lines (see Table 1 ▸ for details). For clarity only H atoms involved in these inter­actions have been included.

Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N4H4O6i 0.80(3)2.51(3)3.295(3)167(2)
C6H6BO9ii 0.972.323.184(3)141

Symmetry codes: (i) ; (ii) .

Database survey

A search of the Cambridge Structural Database (Version 5.36; Groom & Allen, 2014 ▸) for substituted 3a,5,6,6a-tetra­hydro­furo[2,3-d][1,3]dioxoles gave 485 hits (excluding metal-org­anics). However, only two structures are 3a,5,6,6a-tetra­hydrofuro[2,3-d][1,3]dioxol-6-yl­methyl­carbamic acid derivatives, viz. (3R)-3′-ethyl-1,2:5,6-di-O-iso­propyl­idene-spiro­(3-de­oxy-a-d-allo­furan­ose-3,5′-oxazolidin)-2′-one (CIDVES; Turks et al., 2013 ▸), and (3R)-3′-phenyl­acetyl-1,2:5,6-di-O-iso­propylidene­spiro­(3-de­oxy-a-d-allo­furan­ose-3,5′-oxazolidin)-2′-one (YIMBED; Turks et al., 2013 ▸).

Synthesis and crystallization

The two methods for the synthesis of compound (1) are illus­trated in Fig. 1 ▸. From compound (2): A mixture of nitro­methyl compound (2) (5.00 g, 16.5 mmol, 1 equiv.) and 10% Pd/C (1.00 g) in MeOH (200 ml) was hydrogenated under 40 atm pressure at 313 K overnight (TLC control). The resulting reaction mixture was filtered through celite and the filtrate was evaporated under reduced pressure. The residue was dissolved in THF (60 ml) and a solution of K2CO3 (2.50 g, 18.1 mmol, 1.1 equiv.) in water (35 ml) was added. The resulting mixture was cooled to 273 K and N-(benzyl­oxycarbon­yloxy)succinimide (4.50 g, 18.1 mmol, 1.1 equiv) was added portion-wise. The reaction mixture was stirred at 273 K for 4 h (TLC control). Solid K2CO3 (1 g) was added and the formed layers were separated. The organic phase was washed with saturated aqueous solution of NaHSO4 (50 ml) while the aqueous phase was extracted with a mixture of hexa­nes and CH2Cl2 (3 × 100 ml, 8:2 v/v). The combined organic phase was washed with brine (2 × 100 ml), dried over Na2SO4, filtered and evaporated under reduced pressure. Crude product (1) was obtained as a yellow oil (6.60 g, 98% crude) and used further without additional purification. From compound (3): Through a mixture of azide (3) (14.86 g, 49.7 mmol, 1.0 equiv) and 10% Pd/C (1.45 g) in MeOH (150 ml) hydrogen flow was passed at ambient temperature and pressure for 1 h (TLC control). The reaction mixture was filtered through a celite pad and the filtrate was evaporated under reduced pressure. The residue was dissolved in anhydrous CH2Cl2 (200 ml) and tri­ethyl­amine (8.5 ml, 61.0 mmol, 1.0 equiv) was added. The resulting solution was cooled to 273 K and benzyl chloro­formate (7.0 ml, 60.5 mmol, 1.2 equiv) was added portion-wise. The reaction mixture was stirred under an argon atmosphere at ambient temperature overnight. The solvent was evaporated under reduced pressure and the residue was dissolved in EtOAc (100 ml). The resulting solution was washed with a saturated aqueous solution of NaHCO3 (3 × 20 ml) and brine (3 × 30 ml), dried over Na2SO4, filtered and evaporated. Column chromatography (hexa­nes/EtOAc 4:1 to 2:1 v/v) yielded product (1) (15.22 g, 75%) as a colourless oil that solidifies at low temperatures. R f = 0.6 (hexa­nes/EtOAc 1:1). 1H NMR (CDCl3, 300 MHz): 1.30, 1.34, 1.41, 1.50 (4s, 12H, 2 (H3C)2C), 2.13 [dq, J = 9.6, 4.9 Hz, 1H, H-C(3)], 3.52 [m, 2H, H2C(3′)], 3.77 [m, 1H, H-C(5)], 3.95 [m, 2H, H2C(6)], 4.11 [m, 1H, H-C(4]), 4.68 [t, J = 4.3 Hz, 1H, H-C(2)], 5.11 (s, AB syst., 2H, H2C-Ph), 5.67 (t, J = 6.0 Hz, 1H, HN), 5.75 [d, J = 3.8 Hz, 1H, H-C(1)], 7.35 (m, 5H, Ph). 13C NMR (CDCl3, 75 MHz): 25.2, 26.3, 26.5, 26.7, 38.0, 48.6, 66.5, 67.8, 77.3, 81.4, 82.0, 104.8, 109.8, 112.2, 128.0, 128.0, 128.5, 136.8, 156.4. HRMS: Calculated for C21H29NO7Na, [M + Na]+ 430.1842. Found: 430.1795. X-ray quality single crystals were obtained by spontaneous crystallization of the title compound from the neat oily material at 277 K.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The H atom on the amino group was located in a difference Fourier map and freely refined. The C-bound H atoms were positioned geometrically and refined as riding on their parent atoms: C—H = 0.93–0.98Å with U iso(H) = 1.5U eq(C) for methyl H atoms and 1.2U eq(C) for other H atoms. Reflections (1,0,0) and (0,0,2), whose intensities were affected by the beam-stop, were removed from the final refinement.
Table 2

Experimental details

Crystal data
Chemical formulaC21H29NO7
M r 407.45
Crystal system, space groupMonoclinic, P21
Temperature (K)173
a, b, c ()9.3235(3), 5.4118(1), 20.4381(7)
()96.748(1)
V (3)1024.10(5)
Z 2
Radiation typeMo K
(mm1)0.10
Crystal size (mm)0.32 0.31 0.20
 
Data collection
DiffractometerNonius KappaCCD
No. of measured, independent and observed [I > 2(I)] reflections5535, 3279, 2597
R int 0.034
(sin /)max (1)0.705
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.045, 0.100, 1.03
No. of reflections3279
No. of parameters270
No. of restraints1
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
max, min (e 3)0.23, 0.21

Computer programs: KappaCCD Server Software (Nonius, 1997 ▸), HKL DENZO and SCALEPACK (Otwinowski Minor, 1997 ▸), SIR2011 (Burla et al., 2012 ▸), Mercury (Macrae et al., 2008 ▸), SHELXL97 (Sheldrick, 2008 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015017582/su5210sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017582/su5210Isup2.hkl CCDC reference: 1425954 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H29NO7F(000) = 436
Mr = 407.45Dx = 1.321 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 11906 reflections
a = 9.3235 (3) Åθ = 1.0–30.0°
b = 5.4118 (1) ŵ = 0.10 mm1
c = 20.4381 (7) ÅT = 173 K
β = 96.748 (1)°Block, colourless
V = 1024.10 (5) Å30.32 × 0.31 × 0.20 mm
Z = 2
Nonius KappaCCD diffractometer2597 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
Graphite monochromatorθmax = 30.1°, θmin = 2.3°
CCD scansh = −13→13
5535 measured reflectionsk = −7→6
3279 independent reflectionsl = −28→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.044P)2 + 0.1203P] where P = (Fo2 + 2Fc2)/3
3279 reflections(Δ/σ)max < 0.001
270 parametersΔρmax = 0.23 e Å3
1 restraintΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.34514 (16)0.3163 (3)0.37758 (7)0.0315 (4)
C10.2837 (2)0.3609 (4)0.31216 (10)0.0257 (4)
H10.29220.53560.30060.031*
C20.3645 (2)0.1973 (4)0.26790 (10)0.0236 (4)
H20.38400.28070.22730.028*
C30.5014 (2)0.1255 (4)0.31153 (9)0.0216 (4)
H30.56950.26350.31180.026*
C40.4468 (2)0.1149 (4)0.37946 (9)0.0219 (4)
H40.3965−0.04190.38420.026*
C50.5571 (2)0.1572 (4)0.43934 (10)0.0221 (4)
H50.50630.18030.47820.027*
C60.6694 (2)−0.0473 (4)0.45328 (10)0.0239 (4)
H6A0.6898−0.07770.50020.029*
H6B0.6366−0.19970.43140.029*
O70.79329 (15)0.0472 (3)0.42712 (7)0.0251 (3)
C80.7920 (2)0.3060 (4)0.43977 (10)0.0234 (4)
O90.64107 (15)0.3721 (3)0.43018 (7)0.0251 (3)
C100.8696 (3)0.4342 (4)0.38914 (12)0.0326 (5)
H10A0.82170.39970.34590.049*
H10B0.96740.37580.39230.049*
H10C0.86950.60920.39680.049*
C110.8532 (2)0.3653 (4)0.51018 (11)0.0313 (5)
H11A0.95490.33080.51610.047*
H11B0.80570.26570.54000.047*
H11C0.83760.53690.51900.047*
O120.13924 (16)0.2825 (3)0.30147 (9)0.0356 (4)
C130.1257 (2)0.0752 (4)0.25826 (11)0.0277 (5)
O140.27047 (15)−0.0114 (3)0.25586 (7)0.0282 (3)
C150.0589 (3)0.1589 (6)0.19055 (13)0.0490 (7)
H15A0.11600.28970.17520.074*
H15B−0.03750.21760.19320.074*
H15C0.05580.02250.16040.074*
C160.0396 (3)−0.1209 (5)0.28758 (14)0.0411 (6)
H16A−0.0564−0.06120.29040.062*
H16B0.0849−0.16170.33090.062*
H16C0.0352−0.26560.26020.062*
C3'0.5763 (2)−0.1049 (4)0.29004 (10)0.0240 (4)
H3'10.6569−0.14700.32260.029*
H3'20.5093−0.24270.28630.029*
N4'0.6281 (2)−0.0585 (4)0.22661 (9)0.0279 (4)
C5'0.6706 (2)−0.2436 (4)0.18935 (10)0.0279 (5)
O6'0.66529 (19)−0.4616 (3)0.20170 (8)0.0363 (4)
O7'0.71820 (19)−0.1464 (3)0.13471 (8)0.0403 (4)
C8'0.7650 (3)−0.3172 (5)0.08682 (11)0.0418 (6)
H8'10.7087−0.46820.08560.050*
H8'20.8662−0.35840.09790.050*
C1''0.7418 (3)−0.1870 (5)0.02154 (11)0.0355 (5)
C2''0.8230 (3)0.0185 (6)0.00934 (12)0.0444 (6)
H2''0.89680.07080.04090.053*
C3''0.7954 (3)0.1460 (6)−0.04903 (14)0.0525 (7)
H3''0.85020.2845−0.05650.063*
C4''0.6868 (3)0.0694 (6)−0.09655 (13)0.0520 (8)
H4''0.66790.1563−0.13590.062*
C5''0.6074 (3)−0.1351 (7)−0.08519 (13)0.0523 (8)
H5''0.5349−0.1882−0.11730.063*
C6''0.6334 (3)−0.2644 (6)−0.02641 (13)0.0454 (7)
H6''0.5783−0.4028−0.01910.055*
H4'0.647 (3)0.080 (5)0.2161 (12)0.028 (7)*
U11U22U33U12U13U23
O10.0247 (8)0.0388 (9)0.0308 (8)0.0114 (7)0.0028 (6)−0.0044 (7)
C10.0195 (10)0.0230 (9)0.0345 (11)0.0010 (8)0.0020 (8)0.0002 (9)
C20.0211 (10)0.0238 (10)0.0262 (10)−0.0003 (8)0.0038 (8)0.0025 (8)
C30.0170 (9)0.0232 (9)0.0249 (10)−0.0002 (8)0.0032 (7)−0.0002 (8)
C40.0189 (9)0.0221 (10)0.0255 (10)0.0005 (7)0.0065 (8)−0.0007 (8)
C50.0225 (10)0.0197 (9)0.0250 (10)−0.0009 (9)0.0062 (8)−0.0007 (8)
C60.0250 (11)0.0190 (9)0.0272 (10)−0.0019 (8)0.0016 (8)0.0025 (8)
O70.0232 (7)0.0175 (6)0.0356 (8)0.0016 (6)0.0072 (6)0.0001 (6)
C80.0191 (10)0.0202 (9)0.0309 (11)−0.0007 (8)0.0035 (8)−0.0022 (8)
O90.0209 (7)0.0162 (6)0.0373 (8)0.0016 (6)−0.0002 (6)−0.0009 (6)
C100.0311 (12)0.0280 (11)0.0403 (13)−0.0024 (10)0.0107 (9)−0.0010 (10)
C110.0267 (11)0.0284 (10)0.0373 (12)0.0007 (9)−0.0031 (9)−0.0035 (10)
O120.0190 (7)0.0322 (9)0.0553 (10)0.0009 (7)0.0031 (7)−0.0107 (8)
C130.0202 (10)0.0256 (10)0.0361 (12)0.0009 (8)−0.0015 (8)−0.0003 (9)
O140.0206 (7)0.0272 (8)0.0361 (8)0.0014 (6)0.0002 (6)−0.0051 (6)
C150.0341 (13)0.0673 (18)0.0430 (15)0.0070 (15)−0.0067 (11)0.0092 (14)
C160.0270 (12)0.0316 (12)0.0651 (17)0.0012 (10)0.0069 (11)0.0080 (12)
C3'0.0235 (10)0.0266 (10)0.0226 (10)0.0031 (8)0.0053 (8)−0.0002 (8)
N4'0.0324 (10)0.0264 (9)0.0262 (9)−0.0010 (8)0.0086 (7)−0.0008 (8)
C5'0.0249 (11)0.0371 (12)0.0215 (10)0.0018 (9)0.0015 (8)−0.0028 (9)
O6'0.0486 (11)0.0295 (8)0.0319 (9)0.0045 (8)0.0087 (7)−0.0024 (7)
O7'0.0574 (11)0.0382 (9)0.0287 (8)0.0009 (9)0.0195 (7)−0.0046 (7)
C8'0.0536 (15)0.0439 (14)0.0300 (12)0.0132 (13)0.0142 (11)−0.0045 (11)
C1''0.0417 (13)0.0390 (13)0.0274 (11)0.0092 (11)0.0106 (9)−0.0045 (10)
C2''0.0479 (15)0.0494 (15)0.0354 (14)0.0047 (13)0.0027 (11)−0.0031 (12)
C3''0.0637 (18)0.0468 (15)0.0491 (17)0.0009 (16)0.0156 (14)0.0045 (14)
C4''0.0669 (19)0.0580 (19)0.0323 (14)0.0206 (16)0.0110 (13)0.0033 (13)
C5''0.0498 (16)0.075 (2)0.0310 (13)0.0108 (17)0.0005 (11)−0.0100 (14)
C6''0.0480 (15)0.0546 (16)0.0352 (13)0.0027 (13)0.0111 (11)−0.0086 (12)
O1—C11.412 (2)C13—C161.498 (3)
O1—C41.442 (2)C13—C151.519 (3)
C1—O121.404 (2)C15—H15A0.9600
C1—C21.526 (3)C15—H15B0.9600
C1—H10.9800C15—H15C0.9600
C2—O141.433 (2)C16—H16A0.9600
C2—C31.519 (3)C16—H16B0.9600
C2—H20.9800C16—H16C0.9600
C3—C3'1.519 (3)C3'—N4'1.457 (3)
C3—C41.535 (3)C3'—H3'10.9700
C3—H30.9800C3'—H3'20.9700
C4—C51.520 (3)N4'—C5'1.346 (3)
C4—H40.9800N4'—H4'0.80 (3)
C5—O91.427 (2)C5'—O6'1.209 (3)
C5—C61.527 (3)C5'—O7'1.355 (3)
C5—H50.9800O7'—C8'1.450 (3)
C6—O71.424 (3)C8'—C1''1.502 (3)
C6—H6A0.9700C8'—H8'10.9700
C6—H6B0.9700C8'—H8'20.9700
O7—C81.424 (2)C1''—C2''1.384 (4)
C8—O91.443 (2)C1''—C6''1.387 (4)
C8—C101.501 (3)C2''—C3''1.376 (4)
C8—C111.519 (3)C2''—H2''0.9300
C10—H10A0.9600C3''—C4''1.382 (4)
C10—H10B0.9600C3''—H3''0.9300
C10—H10C0.9600C4''—C5''1.367 (5)
C11—H11A0.9600C4''—H4''0.9300
C11—H11B0.9600C5''—C6''1.387 (4)
C11—H11C0.9600C5''—H5''0.9300
O12—C131.424 (3)C6''—H6''0.9300
C13—O141.435 (3)
C1—O1—C4110.30 (15)C1—O12—C13110.36 (16)
O12—C1—O1111.76 (17)O12—C13—O14105.28 (15)
O12—C1—C2105.29 (17)O12—C13—C16108.82 (19)
O1—C1—C2106.75 (16)O14—C13—C16109.43 (18)
O12—C1—H1110.9O12—C13—C15109.1 (2)
O1—C1—H1110.9O14—C13—C15110.69 (19)
C2—C1—H1110.9C16—C13—C15113.2 (2)
O14—C2—C3110.74 (16)C2—O14—C13107.18 (15)
O14—C2—C1102.96 (16)C13—C15—H15A109.5
C3—C2—C1103.87 (16)C13—C15—H15B109.5
O14—C2—H2112.8H15A—C15—H15B109.5
C3—C2—H2112.8C13—C15—H15C109.5
C1—C2—H2112.8H15A—C15—H15C109.5
C2—C3—C3'115.04 (17)H15B—C15—H15C109.5
C2—C3—C4101.29 (16)C13—C16—H16A109.5
C3'—C3—C4116.30 (17)C13—C16—H16B109.5
C2—C3—H3107.9H16A—C16—H16B109.5
C3'—C3—H3107.9C13—C16—H16C109.5
C4—C3—H3107.9H16A—C16—H16C109.5
O1—C4—C5106.73 (15)H16B—C16—H16C109.5
O1—C4—C3103.54 (15)N4'—C3'—C3109.09 (17)
C5—C4—C3117.26 (16)N4'—C3'—H3'1109.9
O1—C4—H4109.7C3—C3'—H3'1109.9
C5—C4—H4109.7N4'—C3'—H3'2109.9
C3—C4—H4109.7C3—C3'—H3'2109.9
O9—C5—C4110.29 (16)H3'1—C3'—H3'2108.3
O9—C5—C6103.92 (14)C5'—N4'—C3'121.7 (2)
C4—C5—C6115.15 (17)C5'—N4'—H4'116.9 (18)
O9—C5—H5109.1C3'—N4'—H4'120.3 (18)
C4—C5—H5109.1O6'—C5'—N4'125.9 (2)
C6—C5—H5109.1O6'—C5'—O7'125.2 (2)
O7—C6—C5103.79 (16)N4'—C5'—O7'108.9 (2)
O7—C6—H6A111.0C5'—O7'—C8'117.5 (2)
C5—C6—H6A111.0O7'—C8'—C1''106.1 (2)
O7—C6—H6B111.0O7'—C8'—H8'1110.5
C5—C6—H6B111.0C1''—C8'—H8'1110.5
H6A—C6—H6B109.0O7'—C8'—H8'2110.5
C6—O7—C8105.08 (16)C1''—C8'—H8'2110.5
O7—C8—O9104.38 (16)H8'1—C8'—H8'2108.7
O7—C8—C10108.31 (18)C2''—C1''—C6''118.9 (2)
O9—C8—C10109.48 (17)C2''—C1''—C8'120.8 (2)
O7—C8—C11111.69 (17)C6''—C1''—C8'120.2 (3)
O9—C8—C11109.16 (17)C3''—C2''—C1''120.6 (3)
C10—C8—C11113.42 (18)C3''—C2''—H2''119.7
C5—O9—C8108.74 (14)C1''—C2''—H2''119.7
C8—C10—H10A109.5C2''—C3''—C4''120.4 (3)
C8—C10—H10B109.5C2''—C3''—H3''119.8
H10A—C10—H10B109.5C4''—C3''—H3''119.8
C8—C10—H10C109.5C5''—C4''—C3''119.4 (3)
H10A—C10—H10C109.5C5''—C4''—H4''120.3
H10B—C10—H10C109.5C3''—C4''—H4''120.3
C8—C11—H11A109.5C4''—C5''—C6''120.8 (3)
C8—C11—H11B109.5C4''—C5''—H5''119.6
H11A—C11—H11B109.5C6''—C5''—H5''119.6
C8—C11—H11C109.5C5''—C6''—C1''119.9 (3)
H11A—C11—H11C109.5C5''—C6''—H6''120.1
H11B—C11—H11C109.5C1''—C6''—H6''120.1
C4—O1—C1—O12107.54 (18)C11—C8—O9—C5−95.99 (19)
C4—O1—C1—C2−7.1 (2)O1—C1—O12—C13−111.56 (19)
O12—C1—C2—O14−20.6 (2)C2—C1—O12—C134.0 (2)
O1—C1—C2—O1498.33 (18)C1—O12—C13—O1414.4 (2)
O12—C1—C2—C3−136.12 (17)C1—O12—C13—C16131.58 (19)
O1—C1—C2—C3−17.2 (2)C1—O12—C13—C15−104.5 (2)
O14—C2—C3—C3'49.2 (2)C3—C2—O14—C13140.31 (17)
C1—C2—C3—C3'159.10 (16)C1—C2—O14—C1329.82 (19)
O14—C2—C3—C4−77.1 (2)O12—C13—O14—C2−28.1 (2)
C1—C2—C3—C432.8 (2)C16—C13—O14—C2−144.9 (2)
C1—O1—C4—C5152.58 (16)C15—C13—O14—C289.6 (2)
C1—O1—C4—C328.2 (2)C2—C3—C3'—N4'65.0 (2)
C2—C3—C4—O1−37.23 (19)C4—C3—C3'—N4'−176.82 (16)
C3'—C3—C4—O1−162.69 (16)C3—C3'—N4'—C5'−165.57 (19)
C2—C3—C4—C5−154.43 (17)C3'—N4'—C5'—O6'3.5 (4)
C3'—C3—C4—C580.1 (2)C3'—N4'—C5'—O7'−177.68 (18)
O1—C4—C5—O9−67.04 (19)O6'—C5'—O7'—C8'0.7 (3)
C3—C4—C5—O948.4 (2)N4'—C5'—O7'—C8'−178.11 (19)
O1—C4—C5—C6175.77 (16)C5'—O7'—C8'—C1''153.0 (2)
C3—C4—C5—C6−68.8 (2)O7'—C8'—C1''—C2''67.3 (3)
O9—C5—C6—O7−20.8 (2)O7'—C8'—C1''—C6''−109.6 (3)
C4—C5—C6—O799.97 (19)C6''—C1''—C2''—C3''0.9 (4)
C5—C6—O7—C835.75 (19)C8'—C1''—C2''—C3''−176.1 (2)
C6—O7—C8—O9−37.11 (19)C1''—C2''—C3''—C4''−0.5 (4)
C6—O7—C8—C10−153.69 (17)C2''—C3''—C4''—C5''−0.3 (4)
C6—O7—C8—C1180.7 (2)C3''—C4''—C5''—C6''0.7 (4)
C4—C5—O9—C8−125.60 (16)C4''—C5''—C6''—C1''−0.3 (4)
C6—C5—O9—C8−1.7 (2)C2''—C1''—C6''—C5''−0.5 (4)
O7—C8—O9—C523.5 (2)C8'—C1''—C6''—C5''176.5 (2)
C10—C8—O9—C5139.31 (17)
D—H···AD—HH···AD···AD—H···A
N4′—H4′···O6′i0.80 (3)2.51 (3)3.295 (3)167 (2)
C6—H6B···O9ii0.972.323.184 (3)141
  7 in total

Review 1.  Chemical synthesis of heterocyclic-sugar nucleoside analogues.

Authors:  Giovanni Romeo; Ugo Chiacchio; Antonino Corsaro; Pedro Merino
Journal:  Chem Rev       Date:  2010-06-09       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The Cambridge Structural Database in retrospect and prospect.

Authors:  Colin R Groom; Frank H Allen
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-02       Impact factor: 15.336

Review 4.  A compendium of cyclic sugar amino acids and their carbocyclic and heterocyclic nitrogen analogues.

Authors:  Martijn Risseeuw; Mark Overhand; George W J Fleet; Michela I Simone
Journal:  Amino Acids       Date:  2013-08-18       Impact factor: 3.520

Review 5.  Heterocyclic nucleosides: chemical synthesis and biological properties.

Authors:  Pedro Merino
Journal:  Curr Med Chem       Date:  2006       Impact factor: 4.530

6.  A practical access to glucose- and allose-based (5+5) 3-spiropseudonucleosides from a common intermediate.

Authors:  Māris Turks; Vitalijs Rodins; Evija Rolava; Pāvels Ostrovskis; Sergey Belyakov
Journal:  Carbohydr Res       Date:  2013-04-17       Impact factor: 2.104

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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