| Literature DB >> 26594390 |
D Douglas Richards1, M Trisha C Ang1, Robert McDonald2, Matthias Bierenstiel1.
Abstract
The reaction of pyrrole-2-carboxaldehyde and 2-(methyl-sulfan-yl)aniline in refluxing methanol gave an olive-green residue in which yellow crystals of the title compound, C12H12N2S·CH3OH, were grown from slow evaporation of methanol at 263 K. In the crystal, hydrogen-bonding inter-actions link the aniline mol-ecule and a nearby methanol solvent mol-ecule. These units are linked by a pair of weak C-H⋯Omethanol interactions, forming inversion dimers consisting of two main molecules and two solvent molecules.Entities:
Keywords: N,S-ligand; Schiff base; crystal structure; hydrogen bonding; imine
Year: 2015 PMID: 26594390 PMCID: PMC4647435 DOI: 10.1107/S205698901501590X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Perspective view of the 2-methylsulfanyl-N-[(1H-pyrrol-2-yl)methylidene]aniline molecule showing the atom-labelling scheme. Non-hydrogen atoms are represented by Gaussian ellipsoids at the 30% probability level.
Figure 2Illustration of hydrogen-bonded interactions (dotted lines) between the 2-methylsulfanyl-N-[(1H-pyrrol-2-yl)methylidene]aniline molecule and a nearby solvent methanol molecule.
Hydrogen-bond geometry (, )
|
|
| H |
|
|
|---|---|---|---|---|
| N2H2 | 0.884(18) | 2.025(18) | 2.9030(16) | 172.0(16) |
| O1 | 0.83(3) | 2.76(3) | 3.5134(12) | 152(2) |
| O1 | 0.83(3) | 2.49(2) | 3.1116(16) | 132(2) |
| C7H7 | 0.98 | 2.55 | 3.5181(18) | 168 |
Symmetry code: (i) .
Figure 3Packing view of (1) as viewed slightly offset from along the a axis.
Experimental details
| Crystal data | |
| Chemical formula | C12H12N2SCH4O |
|
| 248.34 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 193 |
|
| 7.5959(4), 7.0062(4), 24.4986(14) |
| () | 98.4543(7) |
|
| 1289.61(12) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 0.24 |
| Crystal size (mm) | 0.24 0.20 0.15 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Integration ( |
|
| 0.935, 1.000 |
| No. of measured, independent and observed [ | 10802, 3055, 2579 |
|
| 0.025 |
| (sin /)max (1) | 0.663 |
| Refinement | |
|
| 0.032, 0.090, 1.04 |
| No. of reflections | 3055 |
| No. of parameters | 165 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| max, min (e 3) | 0.28, 0.20 |
Computer programs: APEX2 and SAINT (Bruker, 2013 ▸), SHELXD (Schneider Sheldrick, 2002 ▸), SHELXL2014 (Sheldrick, 2015 ▸), SHELXTL (Sheldrick, 2008 ▸) and Mercury (Macrae et al., 2006 ▸).
| C12H12N2S·CH4O | |
| Monoclinic, | Mo |
| Cell parameters from 5994 reflections | |
| θ = 2.7–27.9° | |
| µ = 0.24 mm−1 | |
| β = 98.4543 (7)° | |
| Fragment, colourless | |
| 0.24 × 0.20 × 0.15 mm |
| Bruker APEXII CCD diffractometer | 2579 reflections with |
| ω scans | |
| Absorption correction: integration ( | θmax = 28.1°, θmin = 1.7° |
| 10802 measured reflections | |
| 3055 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.28 e Å−3 | |
| 3055 reflections | Δρmin = −0.20 e Å−3 |
| 165 parameters | Extinction correction: |
| 0 restraints | Extinction coefficient: 0.0044 (11) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S | 0.27868 (4) | 0.27649 (5) | 0.03023 (2) | 0.02884 (11) | |
| N1 | 0.43422 (14) | 0.29520 (16) | 0.14334 (4) | 0.0274 (2) | |
| N2 | 0.19082 (15) | 0.38459 (17) | 0.21958 (5) | 0.0308 (3) | |
| H2N | 0.169 (2) | 0.457 (3) | 0.1897 (7) | 0.049 (5)* | |
| C1 | 0.50824 (16) | 0.24857 (17) | 0.05218 (5) | 0.0242 (3) | |
| C2 | 0.56495 (17) | 0.25724 (17) | 0.10935 (5) | 0.0255 (3) | |
| C3 | 0.74554 (18) | 0.24302 (19) | 0.12952 (6) | 0.0309 (3) | |
| H3 | 0.7846 | 0.2513 | 0.1681 | 0.037* | |
| C4 | 0.86910 (17) | 0.2168 (2) | 0.09371 (6) | 0.0338 (3) | |
| H4 | 0.9922 | 0.2080 | 0.1078 | 0.041* | |
| C5 | 0.81268 (18) | 0.2034 (2) | 0.03767 (6) | 0.0340 (3) | |
| H5 | 0.8972 | 0.1837 | 0.0132 | 0.041* | |
| C6 | 0.63324 (17) | 0.21859 (19) | 0.01680 (6) | 0.0296 (3) | |
| H6 | 0.5955 | 0.2085 | −0.0218 | 0.036* | |
| C7 | 0.2639 (2) | 0.2898 (2) | −0.04355 (6) | 0.0345 (3) | |
| H7A | 0.3419 | 0.3918 | −0.0533 | 0.052* | |
| H7B | 0.1408 | 0.3171 | −0.0598 | 0.052* | |
| H7C | 0.3011 | 0.1678 | −0.0578 | 0.052* | |
| C8 | 0.44496 (18) | 0.21148 (19) | 0.19028 (5) | 0.0289 (3) | |
| H8 | 0.5356 | 0.1188 | 0.1998 | 0.035* | |
| C9 | 0.32524 (18) | 0.25263 (19) | 0.22884 (5) | 0.0280 (3) | |
| C10 | 0.31947 (19) | 0.1746 (2) | 0.28029 (5) | 0.0330 (3) | |
| H10 | 0.3969 | 0.0790 | 0.2977 | 0.040* | |
| C11 | 0.1793 (2) | 0.2613 (2) | 0.30227 (6) | 0.0362 (3) | |
| H11 | 0.1440 | 0.2356 | 0.3372 | 0.043* | |
| C12 | 0.10244 (19) | 0.3905 (2) | 0.26377 (5) | 0.0348 (3) | |
| H12 | 0.0039 | 0.4705 | 0.2675 | 0.042* | |
| O1S | 0.15530 (14) | 0.62192 (16) | 0.12144 (4) | 0.0388 (3) | |
| H1SO | 0.221 (3) | 0.551 (4) | 0.1064 (10) | 0.090 (8)* | |
| C1S | 0.2439 (2) | 0.7991 (2) | 0.12954 (7) | 0.0493 (4) | |
| H1SA | 0.2039 | 0.8659 | 0.1607 | 0.074* | |
| H1SB | 0.2167 | 0.8768 | 0.0961 | 0.074* | |
| H1SC | 0.3726 | 0.7775 | 0.1375 | 0.074* |
| S | 0.02473 (17) | 0.0349 (2) | 0.02682 (18) | −0.00058 (12) | 0.00369 (12) | −0.00038 (13) |
| N1 | 0.0292 (5) | 0.0298 (6) | 0.0235 (5) | −0.0037 (4) | 0.0048 (4) | −0.0030 (4) |
| N2 | 0.0348 (6) | 0.0332 (6) | 0.0238 (5) | 0.0001 (5) | 0.0020 (4) | 0.0037 (5) |
| C1 | 0.0252 (6) | 0.0213 (6) | 0.0265 (6) | −0.0033 (4) | 0.0054 (5) | −0.0004 (5) |
| C2 | 0.0274 (6) | 0.0223 (6) | 0.0274 (6) | −0.0025 (5) | 0.0055 (5) | −0.0006 (5) |
| C3 | 0.0304 (6) | 0.0302 (7) | 0.0310 (7) | −0.0018 (5) | 0.0007 (5) | 0.0017 (5) |
| C4 | 0.0236 (6) | 0.0322 (7) | 0.0452 (8) | −0.0007 (5) | 0.0035 (5) | −0.0003 (6) |
| C5 | 0.0292 (6) | 0.0333 (8) | 0.0421 (8) | −0.0020 (5) | 0.0135 (6) | −0.0056 (6) |
| C6 | 0.0304 (6) | 0.0305 (7) | 0.0294 (7) | −0.0040 (5) | 0.0089 (5) | −0.0042 (5) |
| C7 | 0.0400 (7) | 0.0345 (8) | 0.0273 (7) | −0.0033 (6) | −0.0006 (5) | 0.0031 (5) |
| C8 | 0.0309 (6) | 0.0283 (7) | 0.0274 (6) | −0.0039 (5) | 0.0043 (5) | −0.0017 (5) |
| C9 | 0.0313 (6) | 0.0276 (7) | 0.0246 (6) | −0.0035 (5) | 0.0028 (5) | 0.0002 (5) |
| C10 | 0.0367 (7) | 0.0346 (7) | 0.0271 (7) | −0.0008 (6) | 0.0029 (5) | 0.0058 (5) |
| C11 | 0.0413 (8) | 0.0446 (8) | 0.0234 (6) | −0.0034 (6) | 0.0072 (5) | 0.0013 (6) |
| C12 | 0.0346 (7) | 0.0392 (8) | 0.0312 (7) | 0.0007 (6) | 0.0068 (5) | −0.0027 (6) |
| O1S | 0.0424 (6) | 0.0343 (6) | 0.0414 (6) | 0.0066 (5) | 0.0124 (5) | 0.0013 (5) |
| C1S | 0.0525 (9) | 0.0449 (10) | 0.0524 (10) | −0.0038 (8) | 0.0144 (8) | −0.0030 (8) |
| S—C1 | 1.7586 (13) | C7—H7A | 0.9800 |
| S—C7 | 1.7968 (14) | C7—H7B | 0.9800 |
| N1—C8 | 1.2829 (17) | C7—H7C | 0.9800 |
| N1—C2 | 1.4118 (16) | C8—C9 | 1.4334 (18) |
| N2—C12 | 1.3557 (17) | C8—H8 | 0.9500 |
| N2—C9 | 1.3714 (17) | C9—C10 | 1.3806 (18) |
| N2—H2N | 0.884 (18) | C10—C11 | 1.401 (2) |
| C1—C6 | 1.3924 (17) | C10—H10 | 0.9500 |
| C1—C2 | 1.4049 (18) | C11—C12 | 1.374 (2) |
| C2—C3 | 1.3915 (18) | C11—H11 | 0.9500 |
| C3—C4 | 1.388 (2) | C12—H12 | 0.9500 |
| C3—H3 | 0.9500 | O1S—C1S | 1.412 (2) |
| C4—C5 | 1.380 (2) | O1S—H1SO | 0.83 (3) |
| C4—H4 | 0.9500 | C1S—H1SA | 0.9800 |
| C5—C6 | 1.3878 (19) | C1S—H1SB | 0.9800 |
| C5—H5 | 0.9500 | C1S—H1SC | 0.9800 |
| C6—H6 | 0.9500 | ||
| C1—S—C7 | 103.05 (7) | S—C7—H7C | 109.5 |
| C8—N1—C2 | 119.01 (12) | H7A—C7—H7C | 109.5 |
| C12—N2—C9 | 109.42 (11) | H7B—C7—H7C | 109.5 |
| C12—N2—H2N | 126.0 (11) | N1—C8—C9 | 122.40 (13) |
| C9—N2—H2N | 124.6 (11) | N1—C8—H8 | 118.8 |
| C6—C1—C2 | 119.34 (12) | C9—C8—H8 | 118.8 |
| C6—C1—S | 124.24 (10) | N2—C9—C10 | 107.17 (12) |
| C2—C1—S | 116.42 (9) | N2—C9—C8 | 123.75 (12) |
| C3—C2—C1 | 119.51 (12) | C10—C9—C8 | 129.07 (13) |
| C3—C2—N1 | 123.11 (12) | C9—C10—C11 | 107.89 (13) |
| C1—C2—N1 | 117.19 (11) | C9—C10—H10 | 126.1 |
| C4—C3—C2 | 120.54 (13) | C11—C10—H10 | 126.1 |
| C4—C3—H3 | 119.7 | C12—C11—C10 | 106.98 (12) |
| C2—C3—H3 | 119.7 | C12—C11—H11 | 126.5 |
| C5—C4—C3 | 119.86 (13) | C10—C11—H11 | 126.5 |
| C5—C4—H4 | 120.1 | N2—C12—C11 | 108.53 (13) |
| C3—C4—H4 | 120.1 | N2—C12—H12 | 125.7 |
| C4—C5—C6 | 120.39 (13) | C11—C12—H12 | 125.7 |
| C4—C5—H5 | 119.8 | C1S—O1S—H1SO | 106.4 (18) |
| C6—C5—H5 | 119.8 | O1S—C1S—H1SA | 109.5 |
| C5—C6—C1 | 120.32 (13) | O1S—C1S—H1SB | 109.5 |
| C5—C6—H6 | 119.8 | H1SA—C1S—H1SB | 109.5 |
| C1—C6—H6 | 119.8 | O1S—C1S—H1SC | 109.5 |
| S—C7—H7A | 109.5 | H1SA—C1S—H1SC | 109.5 |
| S—C7—H7B | 109.5 | H1SB—C1S—H1SC | 109.5 |
| H7A—C7—H7B | 109.5 | ||
| C7—S—C1—C6 | −7.76 (13) | C2—C1—C6—C5 | −2.00 (19) |
| C7—S—C1—C2 | 172.43 (10) | S—C1—C6—C5 | 178.18 (10) |
| C6—C1—C2—C3 | 2.43 (18) | C2—N1—C8—C9 | 175.38 (11) |
| S—C1—C2—C3 | −177.75 (10) | C12—N2—C9—C10 | 0.08 (15) |
| C6—C1—C2—N1 | 177.62 (11) | C12—N2—C9—C8 | −179.73 (13) |
| S—C1—C2—N1 | −2.55 (15) | N1—C8—C9—N2 | −0.6 (2) |
| C8—N1—C2—C3 | −41.88 (18) | N1—C8—C9—C10 | 179.65 (14) |
| C8—N1—C2—C1 | 143.11 (12) | N2—C9—C10—C11 | −0.04 (16) |
| C1—C2—C3—C4 | −1.2 (2) | C8—C9—C10—C11 | 179.75 (13) |
| N1—C2—C3—C4 | −176.13 (12) | C9—C10—C11—C12 | −0.01 (16) |
| C2—C3—C4—C5 | −0.4 (2) | C9—N2—C12—C11 | −0.08 (16) |
| C3—C4—C5—C6 | 0.9 (2) | C10—C11—C12—N2 | 0.06 (17) |
| C4—C5—C6—C1 | 0.4 (2) |
| H··· | ||||
| N2—H2 | 0.884 (18) | 2.025 (18) | 2.9030 (16) | 172.0 (16) |
| O1 | 0.83 (3) | 2.76 (3) | 3.5134 (12) | 152 (2) |
| O1 | 0.83 (3) | 2.49 (2) | 3.1116 (16) | 132 (2) |
| C7—H7 | 0.98 | 2.55 | 3.5181 (18) | 168 |