Literature DB >> 26592351

Computational pathology: Exploring the spatial dimension of tumor ecology.

Sidra Nawaz1, Yinyin Yuan2.   

Abstract

Tumors are evolving ecosystems where cancer subclones and the microenvironment interact. This is analogous to interaction dynamics between species in their natural habitats, which is a prime area of study in ecology. Spatial statistics are frequently used in ecological studies to infer complex relations including predator-prey, resource dependency and co-evolution. Recently, the emerging field of computational pathology has enabled high-throughput spatial analysis by using image processing to identify different cell types and their locations within histological tumor samples. We discuss how these data may be analyzed with spatial statistics used in ecology to reveal patterns and advance our understanding of ecological interactions occurring among cancer cells and their microenvironment.
Copyright © 2015 The Authors. Published by Elsevier Ireland Ltd.. All rights reserved.

Entities:  

Keywords:  Geospatial statistics; Histology; Image analysis; Symbiosis; Tumor microenvironment

Mesh:

Year:  2015        PMID: 26592351     DOI: 10.1016/j.canlet.2015.11.018

Source DB:  PubMed          Journal:  Cancer Lett        ISSN: 0304-3835            Impact factor:   8.679


  20 in total

1.  Geostatistical visualization of ecological interactions in tumors.

Authors:  Hunter Bryan Boyce; Parag Mallick
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2020-02-06

Review 2.  Spatial Heterogeneity in the Tumor Microenvironment.

Authors:  Yinyin Yuan
Journal:  Cold Spring Harb Perspect Med       Date:  2016-08-01       Impact factor: 6.915

Review 3.  Estrogen receptor alpha gene amplification in breast cancer: 25 years of debate.

Authors:  Frederik Holst
Journal:  World J Clin Oncol       Date:  2016-04-10

4.  AdAPT-001, an oncolytic adenovirus armed with a TGF-β trap, overcomes in vivo resistance to PD-L1-immunotherapy.

Authors:  Christopher Larson; Bryan Oronsky; Tony Reid
Journal:  Am J Cancer Res       Date:  2022-07-15       Impact factor: 5.942

5.  SPF: A spatial and functional data analytic approach to cell imaging data.

Authors:  Thao Vu; Julia Wrobel; Benjamin G Bitler; Erin L Schenk; Kimberly R Jordan; Debashis Ghosh
Journal:  PLoS Comput Biol       Date:  2022-06-15       Impact factor: 4.779

Review 6.  Harnessing Tumor Evolution to Circumvent Resistance.

Authors:  Katherine L Pogrebniak; Christina Curtis
Journal:  Trends Genet       Date:  2018-06-11       Impact factor: 11.639

Review 7.  Pathological Bases and Clinical Impact of Intratumor Heterogeneity in Clear Cell Renal Cell Carcinoma.

Authors:  José I López; Javier C Angulo
Journal:  Curr Urol Rep       Date:  2018-01-27       Impact factor: 3.092

8.  Quantification of spatial tumor heterogeneity in immunohistochemistry staining images.

Authors:  Inna Chervoneva; Amy R Peck; Misung Yi; Boris Freydin; Hallgeir Rui
Journal:  Bioinformatics       Date:  2021-06-16       Impact factor: 6.937

9.  Multiplex Immunofluorescence in Formalin-Fixed Paraffin-Embedded Tumor Tissue to Identify Single-Cell-Level PI3K Pathway Activation.

Authors:  Konrad H Stopsack; Ying Huang; Svitlana Tyekucheva; Travis A Gerke; Clyde Bango; Habiba Elfandy; Michaela Bowden; Kathryn L Penney; Thomas M Roberts; Giovanni Parmigiani; Philip W Kantoff; Lorelei A Mucci; Massimo Loda
Journal:  Clin Cancer Res       Date:  2020-09-10       Impact factor: 12.531

10.  Inter-Metastatic Heterogeneity of Tumor Marker Expression and Microenvironment Architecture in a Preclinical Cancer Model.

Authors:  Jessica Kalra; Jennifer Baker; Justin Song; Alastair Kyle; Andrew Minchinton; Marcel Bally
Journal:  Int J Mol Sci       Date:  2021-06-13       Impact factor: 5.923

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