Literature DB >> 26589153

Real-Space Density Functional Theory on Graphical Processing Units: Computational Approach and Comparison to Gaussian Basis Set Methods.

Xavier Andrade1, Alán Aspuru-Guzik1.   

Abstract

We discuss the application of graphical processing units (GPUs) to accelerate real-space density functional theory (DFT) calculations. To make our implementation efficient, we have developed a scheme to expose the data parallelism available in the DFT approach; this is applied to the different procedures required for a real-space DFT calculation. We present results for current-generation GPUs from AMD and Nvidia, which show that our scheme, implemented in the free code Octopus, can reach a sustained performance of up to 90 GFlops for a single GPU, representing a significant speed-up when compared to the CPU version of the code. Moreover, for some systems, our implementation can outperform a GPU Gaussian basis set code, showing that the real-space approach is a competitive alternative for DFT simulations on GPUs.

Entities:  

Year:  2013        PMID: 26589153     DOI: 10.1021/ct400520e

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  4 in total

1.  On the Efficient Evaluation of the Exchange Correlation Potential on Graphics Processing Unit Clusters.

Authors:  David B Williams-Young; Wibe A de Jong; Hubertus J J van Dam; Chao Yang
Journal:  Front Chem       Date:  2020-12-10       Impact factor: 5.221

2.  Application of two-component neural network for exchange-correlation functional interpolation.

Authors:  Alexander Ryabov; Iskander Akhatov; Petr Zhilyaev
Journal:  Sci Rep       Date:  2022-08-19       Impact factor: 4.996

3.  Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems.

Authors:  John A Keith; Valentin Vassilev-Galindo; Bingqing Cheng; Stefan Chmiela; Michael Gastegger; Klaus-Robert Müller; Alexandre Tkatchenko
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 60.622

Review 4.  Recent advances in QM/MM free energy calculations using reference potentials.

Authors:  Fernanda Duarte; Beat A Amrein; David Blaha-Nelson; Shina C L Kamerlin
Journal:  Biochim Biophys Acta       Date:  2014-07-16
  4 in total

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