Literature DB >> 26588754

A Critical Assessment of Two-Body and Three-Body Interactions in Water.

Gregory R Medders1, Volodymyr Babin1, Francesco Paesani1.   

Abstract

The microscopic behavior of water under different conditions and in different environments remains the subject of intense debate. A great number of the controversies arise due to the contradictory predictions obtained within different theoretical models. Relative to conclusions derived from force fields or density functional theory, there is comparably less room to dispute highly correlated electronic structure calculations. Unfortunately, such ab initio calculations are severely limited by system size. In this study, a detailed analysis of the two- and three-body water interactions evaluated at the CCSD(T) level is carried out to quantitatively assess the accuracy of several force fields, DFT models, and ab initio based interaction potentials that are commonly used in molecular simulations. On the basis of this analysis, a new model, HBB2-pol, is introduced which is capable of accurately mapping CCSD(T) results for water dimers and trimers into an efficient analytical function. The accuracy of HBB2-pol is further established through comparison with the experimentally determined second and third virial coefficients.

Entities:  

Year:  2013        PMID: 26588754     DOI: 10.1021/ct300913g

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  10 in total

Review 1.  Fragment-based error estimation in biomolecular modeling.

Authors:  John C Faver; Kenneth M Merz
Journal:  Drug Discov Today       Date:  2013-08-27       Impact factor: 7.851

2.  Improving intermolecular interactions in DFTB3 using extended polarization from chemical-potential equalization.

Authors:  Anders S Christensen; Marcus Elstner; Qiang Cui
Journal:  J Chem Phys       Date:  2015-08-28       Impact factor: 3.488

3.  Understanding and Tracking the Excess Proton in Ab Initio Simulations; Insights from IR Spectra.

Authors:  Chenghan Li; Jessica M J Swanson
Journal:  J Phys Chem B       Date:  2020-06-24       Impact factor: 2.991

4.  A new one-site coarse-grained model for water: Bottom-up many-body projected water (BUMPer). I. General theory and model.

Authors:  Jaehyeok Jin; Yining Han; Alexander J Pak; Gregory A Voth
Journal:  J Chem Phys       Date:  2021-01-28       Impact factor: 3.488

5.  Biomolecular QM/MM Simulations: What Are Some of the "Burning Issues"?

Authors:  Qiang Cui; Tanmoy Pal; Luke Xie
Journal:  J Phys Chem B       Date:  2021-01-06       Impact factor: 2.991

6.  Molecular simulation of water and hydration effects in different environments: challenges and developments for DFTB based models.

Authors:  Puja Goyal; Hu-Jun Qian; Stephan Irle; Xiya Lu; Daniel Roston; Toshifumi Mori; Marcus Elstner; Qiang Cui
Journal:  J Phys Chem B       Date:  2014-09-16       Impact factor: 2.991

Review 7.  Modeling Molecular Interactions in Water: From Pairwise to Many-Body Potential Energy Functions.

Authors:  Gerardo Andrés Cisneros; Kjartan Thor Wikfeldt; Lars Ojamäe; Jibao Lu; Yao Xu; Hedieh Torabifard; Albert P Bartók; Gábor Csányi; Valeria Molinero; Francesco Paesani
Journal:  Chem Rev       Date:  2016-05-17       Impact factor: 60.622

8.  The TensorMol-0.1 model chemistry: a neural network augmented with long-range physics.

Authors:  Kun Yao; John E Herr; David W Toth; Ryker Mckintyre; John Parkhill
Journal:  Chem Sci       Date:  2018-01-18       Impact factor: 9.825

9.  A FFLUX Water Model: Flexible, Polarizable and with a Multipolar Description of Electrostatics.

Authors:  Zak E Hughes; Emmanuel Ren; Joseph C R Thacker; Benjamin C B Symons; Arnaldo F Silva; Paul L A Popelier
Journal:  J Comput Chem       Date:  2019-11-20       Impact factor: 3.376

Review 10.  Functional and Material Properties in Nanocatalyst Design: A Data Handling and Sharing Problem.

Authors:  Daniel Lach; Uladzislau Zhdan; Adam Smolinski; Jaroslaw Polanski
Journal:  Int J Mol Sci       Date:  2021-05-13       Impact factor: 5.923

  10 in total

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