Literature DB >> 26588548

Scalable High-Performance Algorithm for the Simulation of Exciton Dynamics. Application to the Light-Harvesting Complex II in the Presence of Resonant Vibrational Modes.

Christoph Kreisbeck1, Tobias Kramer2, Alán Aspuru-Guzik3.   

Abstract

The accurate simulation of excitonic energy transfer in molecular complexes with coupled electronic and vibrational degrees of freedom is essential for comparing excitonic system parameters obtained from ab initio methods with measured time-resolved spectra. Several exact methods for computing the exciton dynamics within a density-matrix formalism are known but are restricted to small systems with less than 10 sites due to their computational complexity. To study the excitonic energy transfer in larger systems, we adapt and extend the exact hierarchical equation of motion (HEOM) method to various high-performance many-core platforms using the Open Compute Language (OpenCL). For the light-harvesting complex II (LHC II) found in spinach, the HEOM results deviate from predictions of approximate theories and clarify the time scale of the transfer process. We investigate the impact of resonantly coupled vibrations on the relaxation and show that the transfer does not rely on a fine-tuning of specific modes.

Entities:  

Year:  2014        PMID: 26588548     DOI: 10.1021/ct500629s

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  16 in total

1.  Multiscale model of light harvesting by photosystem II in plants.

Authors:  Kapil Amarnath; Doran I G Bennett; Anna R Schneider; Graham R Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

2.  Coarse-grained representation of the quasi adiabatic propagator path integral for the treatment of non-Markovian long-time bath memory.

Authors:  Martin Richter; Benjamin P Fingerhut
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

3.  The Role of Resonant Vibrations in Electronic Energy Transfer.

Authors:  Pavel Malý; Oscar J G Somsen; Vladimir I Novoderezhkin; Tomáš Mančal; Rienk van Grondelle
Journal:  Chemphyschem       Date:  2016-03-22       Impact factor: 3.102

4.  Two-dimensional electronic spectra of the photosynthetic apparatus of green sulfur bacteria.

Authors:  Tobias Kramer; Mirta Rodriguez
Journal:  Sci Rep       Date:  2017-03-27       Impact factor: 4.379

5.  Efficiency of energy funneling in the photosystem II supercomplex of higher plants.

Authors:  Christoph Kreisbeck; Alán Aspuru-Guzik
Journal:  Chem Sci       Date:  2016-02-29       Impact factor: 9.825

6.  Chimera: enabling hierarchy based multi-objective optimization for self-driving laboratories.

Authors:  Florian Häse; Loïc M Roch; Alán Aspuru-Guzik
Journal:  Chem Sci       Date:  2018-08-28       Impact factor: 9.825

7.  Energy-dependent quenching adjusts the excitation diffusion length to regulate photosynthetic light harvesting.

Authors:  Doran I G Bennett; Graham R Fleming; Kapil Amarnath
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-20       Impact factor: 11.205

8.  Local protein solvation drives direct down-conversion in phycobiliprotein PC645 via incoherent vibronic transport.

Authors:  Samuel M Blau; Doran I G Bennett; Christoph Kreisbeck; Gregory D Scholes; Alán Aspuru-Guzik
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-27       Impact factor: 11.205

9.  Machine learning for quantum dynamics: deep learning of excitation energy transfer properties.

Authors:  Florian Häse; Christoph Kreisbeck; Alán Aspuru-Guzik
Journal:  Chem Sci       Date:  2017-10-23       Impact factor: 9.825

10.  Absence of Selection for Quantum Coherence in the Fenna-Matthews-Olson Complex: A Combined Evolutionary and Excitonic Study.

Authors:  Stéphanie Valleau; Romain A Studer; Florian Häse; Christoph Kreisbeck; Rafael G Saer; Robert E Blankenship; Eugene I Shakhnovich; Alán Aspuru-Guzik
Journal:  ACS Cent Sci       Date:  2017-08-30       Impact factor: 14.553

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