Literature DB >> 26587592

Reaction Path Optimization without NEB Springs or Interpolation Algorithms.

P Plessow1,2.   

Abstract

This letter describes a chain-of-states method that optimizes reaction paths under the sole constraint of equally spaced structures. In contrast to NEB and string methods, it requires no spring forces, interpolation algorithms, or other heuristics to control structure distribution. Rigorous use of a quadratic PES allows calculation of an optimization step with a predefined distribution in Cartesian space. The method is a formal extension of single-structure quasi-Newton methods. An initial guess can be evolved, as in the growing string method.

Year:  2013        PMID: 26587592     DOI: 10.1021/ct300951j

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  18 in total

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Journal:  J Chem Phys       Date:  2020-05-14       Impact factor: 3.488

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Journal:  Chemistry       Date:  2021-11-08       Impact factor: 5.020

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Authors:  Mikael P Johansson; Hannu Maaheimo; Filip S Ekholm
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Authors:  Sophie L Mader; Alois Bräuer; Michael Groll; Ville R I Kaila
Journal:  Nat Commun       Date:  2018-03-21       Impact factor: 14.919

5.  Mechanistic Studies of the TRIP-Catalyzed Allylation with Organozinc Reagents.

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6.  Redox-coupled proton pumping drives carbon concentration in the photosynthetic complex I.

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7.  Energetics and Dynamics of Proton-Coupled Electron Transfer in the NADH/FMN Site of Respiratory Complex I.

Authors:  Patricia Saura; Ville R I Kaila
Journal:  J Am Chem Soc       Date:  2019-03-27       Impact factor: 15.419

8.  Water-Gated Proton Transfer Dynamics in Respiratory Complex I.

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Journal:  J Am Chem Soc       Date:  2020-07-30       Impact factor: 15.419

9.  Understanding of multimetallic cluster growth.

Authors:  Stefan Mitzinger; Lies Broeckaert; Werner Massa; Florian Weigend; Stefanie Dehnen
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10.  Conformational dynamics modulate the catalytic activity of the molecular chaperone Hsp90.

Authors:  Sophie L Mader; Abraham Lopez; Jannis Lawatscheck; Qi Luo; Daniel A Rutz; Ana P Gamiz-Hernandez; Michael Sattler; Johannes Buchner; Ville R I Kaila
Journal:  Nat Commun       Date:  2020-03-16       Impact factor: 14.919

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